PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g25430

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

FAR1

Protein Properties

Length: 774aa MW: 89333.6 Da PI: 7.7896

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g25430	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.7	5.8e-21	43	117	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA ++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rtgC+a ++v+++++gkw+++++++eHnHel Tp6g25430 43 EFYNAYAARTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 117 6*************************************876..............589*************************98 PP
2	FAR1	67.6	3.2e-21	210	286	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+ vGF+vr+ + +sk +++it+r+fvCs+eg+++++ r+gC a +++k++++g w v++l+++HnHel p Tp6g25430 210 QFYQAYAEVVGFRVRIGQLFRSKVDNSITSRRFVCSREGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHELEP 286 6*************************************9994..............799*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-16	43	117	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.2E-16	210	286	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-25	386	478	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.348	660	696	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.3E-8	667	693	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-8	671	698	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 774 aa Download sequence Send to blast
MVAKGYPVRV LNHNNGINED GQGNSGVEPH VGLEFDTAEE AREFYNAYAA RTGFKVRTGQ 60 LYRSRTDGTV SSRRFVCSKE GFQLNSRTGC TAFIRVQRRD TGKWVLDQIQ KEHNHELGGE 120 AHVEETTPRP SRAPAPTKLA VTVNPHRPKM KVVDESDREQ RSCLASRKRF KGGGEGEVSD 180 DHHQTQHPKA VSGSEPYAGL EFGSANEACQ FYQAYAEVVG FRVRIGQLFR SKVDNSITSR 240 RFVCSREGFQ HPSRMGCGAY MRIKRQDSGG WIVDRLNKDH NHELEPGKKN DDGMKKITDD 300 VTGGLDSVDL IELNDFGNNH IKKTTRENRI GKEWYPLLLD YFQSRQTEDM GFFYAIELDV 360 INGSCLSIFW ADSRARFACS QFGDAVVFDT SYRKGNYSVP FATFIGFNHH RQPVLLGCAM 420 VADESKEGFL WLFQTWLRAM SGRRPRSIVA DQDLPIQQAL TQVFPGAHHR YSAWQIREKE 480 RENLRPFPSE FKYEYEKCIY QTQTIVEFDS VWNTLINKYG LRDDIWLREI YEHRENWVPA 540 YLRASFFAGI PINGTIEPFF GASLDALTPL REFISRYEQG LEQRREEERK EDFNSYNLQP 600 FLQTKEPVEE QCRRLYTLTV FRIFQNELVQ SYNYLCLKTY EEGAISRFLV RKCGNESEKH 660 AVTFSASNFN SSCSCQMFEH EGLLCRHILK VFNLLDLREL PSGYILHRWT KNAEFGFVRD 720 MESGVSSQDL KALMVWSLRE AASKYIEFGT SSLEKYKLAY EIMREGGKKL CWQR

Sequence ? help Back to Top

Protein Sequence Length: 774 aa Download sequence Send to blast

MVAKGYPVRV LNHNNGINED GQGNSGVEPH VGLEFDTAEE AREFYNAYAA RTGFKVRTGQ  60
LYRSRTDGTV SSRRFVCSKE GFQLNSRTGC TAFIRVQRRD TGKWVLDQIQ KEHNHELGGE  120
AHVEETTPRP SRAPAPTKLA VTVNPHRPKM KVVDESDREQ RSCLASRKRF KGGGEGEVSD  180
DHHQTQHPKA VSGSEPYAGL EFGSANEACQ FYQAYAEVVG FRVRIGQLFR SKVDNSITSR  240
RFVCSREGFQ HPSRMGCGAY MRIKRQDSGG WIVDRLNKDH NHELEPGKKN DDGMKKITDD  300
VTGGLDSVDL IELNDFGNNH IKKTTRENRI GKEWYPLLLD YFQSRQTEDM GFFYAIELDV  360
INGSCLSIFW ADSRARFACS QFGDAVVFDT SYRKGNYSVP FATFIGFNHH RQPVLLGCAM  420
VADESKEGFL WLFQTWLRAM SGRRPRSIVA DQDLPIQQAL TQVFPGAHHR YSAWQIREKE  480
RENLRPFPSE FKYEYEKCIY QTQTIVEFDS VWNTLINKYG LRDDIWLREI YEHRENWVPA  540
YLRASFFAGI PINGTIEPFF GASLDALTPL REFISRYEQG LEQRREEERK EDFNSYNLQP  600
FLQTKEPVEE QCRRLYTLTV FRIFQNELVQ SYNYLCLKTY EEGAISRFLV RKCGNESEKH  660
AVTFSASNFN SSCSCQMFEH EGLLCRHILK VFNLLDLREL PSGYILHRWT KNAEFGFVRD  720
MESGVSSQDL KALMVWSLRE AASKYIEFGT SSLEKYKLAY EIMREGGKKL CWQR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g25430

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC068655	0.0	AC068655.3 Genomic Sequence For Arabidopsis thaliana Clone F17K4 From Chromosome V, complete sequence.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020876091.1	0.0	protein FAR1-RELATED SEQUENCE 12 isoform X1
Refseq	XP_020876092.1	0.0	protein FAR1-RELATED SEQUENCE 12 isoform X1
Swissprot	Q3E7I5	0.0	FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12
TrEMBL	R0FBV1	0.0	R0FBV1_9BRAS; Uncharacterized protein
STRING	XP_006286364.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5730	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	0.0	FAR1-related sequence 12

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]