PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g26080

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

G2-like

Protein Properties

Length: 401aa MW: 45237.6 Da PI: 6.7127

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g26080	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.3	8.4e-34	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFveav+qLGG +kAtPkti+++m+++gLtl+h+kSHLQkYRl Tp6g26080 45 KPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.155	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.7E-32	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-17	44	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.6E-24	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-10	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	3.0E-25	146	192	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MYYHNQHQGK SILSSSRMPI SSERHPFLRG NGTGDSGLIL STDAKPRLKW TPDLHERFVE 60 AVNQLGGGDK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQASSS LNKTSVMTMV 120 EENTPEADES HGESLSIGPQ PNINLPISDA LQMQIEVQRR LHEQLEVQRH LQLRIEAQGK 180 YLQAILEKAQ ETLGRQNLGP AGIEATKAQL SELVSKVSAE YPDASFLEPK ELQNLRHQQM 240 QTAYPPPNSS LESCLTSSEG TQKVPKMLDN RLGLRTYIGD STSEQKEIME EPFFHRMEFT 300 WAEEEGLREN NRPYLSTMVN NAEPRTSYSR RSPGRLSIGV GLQEHRGGSS NNDYTGERFN 360 ENVEDCKLET RTRTALDLNT HDESYGTTRP KQFDLNGFSW N

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MYYHNQHQGK SILSSSRMPI SSERHPFLRG NGTGDSGLIL STDAKPRLKW TPDLHERFVE  60
AVNQLGGGDK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQASSS LNKTSVMTMV  120
EENTPEADES HGESLSIGPQ PNINLPISDA LQMQIEVQRR LHEQLEVQRH LQLRIEAQGK  180
YLQAILEKAQ ETLGRQNLGP AGIEATKAQL SELVSKVSAE YPDASFLEPK ELQNLRHQQM  240
QTAYPPPNSS LESCLTSSEG TQKVPKMLDN RLGLRTYIGD STSEQKEIME EPFFHRMEFT  300
WAEEEGLREN NRPYLSTMVN NAEPRTSYSR RSPGRLSIGV GLQEHRGGSS NNDYTGERFN  360
ENVEDCKLET RTRTALDLNT HDESYGTTRP KQFDLNGFSW N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-21	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-21	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-21	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-21	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g26080

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT003421	0.0	BT003421.1 Arabidopsis thaliana transfactor-like protein (At5g18240) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_197325.1	0.0	myb-related protein 1
Refseq	NP_974798.1	0.0	myb-related protein 1
Swissprot	Q9FK47	0.0	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A1J3DBJ0	0.0	A0A1J3DBJ0_NOCCA; Myb family transcription factor APL
STRING	AT5G18240.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3336	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	0.0	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]