PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g26440

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

WOX

Protein Properties

Length: 277aa MW: 30603.8 Da PI: 6.442

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g26440	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	46.9	4.8e-15	29	89	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Tp6g26440 29 RSRWSPKPEQILILESIFNSgIVNPPKDETVRIRKMLekfgAVGDANVFYWFQNRRSRSRR 89 89***************99***********************************997 PP
2	Wus_type_Homeobox	106.3	1.9e-34	28	91	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+k+e+ ri+++Le++G+++d+NVfyWFQNr++R+r++q Tp6g26440 28 VRSRWSPKPEQILILESIFNSGIVNPPKDETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRQ 91 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.55E-14	23	96	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.224	25	90	IPR001356	Homeobox domain
SMART	SM00389	2.7E-5	27	94	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.4E-8	28	95	IPR009057	Homeodomain-like
Pfam	PF00046	9.8E-13	29	89	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MDQEGSSQSP TVQGRSPSSA PSSSTEPVRS RWSPKPEQIL ILESIFNSGI VNPPKDETVR 60 IRKMLEKFGA VGDANVFYWF QNRRSRSRRR QRQLQAATAA AVTSRGAEDQ QLMTTMTMHH 120 PYSNGENDLG FGSCSNSSAN YFFNDPSSQV SSFLLGLSSS SSNGECESNN GMDHLFTMYG 180 QESDHHHHHH HPSSNDASIL TPSDQNSNFN YQQGLMMVFI NGVPTEVTKG AIDMKAIFGE 240 DSVLLHSSGL PLPTDEFGCL MHSLQHGQAY FLVPRQT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g26440

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117910	0.0	AK117910.1 Arabidopsis thaliana At5g17810 mRNA for unknown protein, complete cds, clone: RAFL19-09-D18.
GenBank	BT006232	0.0	BT006232.1 Arabidopsis thaliana At5g17810 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009126209.1	1e-150	PREDICTED: WUSCHEL-related homeobox 12-like
Swissprot	Q8GY25	1e-125	WOX12_ARATH; WUSCHEL-related homeobox 12
TrEMBL	M4E4D5	1e-149	M4E4D5_BRARP; Uncharacterized protein
STRING	Bra023638.1-P	1e-150	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2819	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	1e-110	WUSCHEL related homeobox 12

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768]