PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g26930

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

MYB_related

Protein Properties

Length: 392aa MW: 43602.6 Da PI: 7.9107

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g26930	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.4e-17	55	99	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT eE++++v+a k++G W++I +++g ++t+ q++s+ qk+ Tp6g26930 55 RERWTDEEHKKFVEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 99 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.72E-17	49	104	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.277	50	104	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.7E-16	53	102	IPR006447	Myb domain, plants
SMART	SM00717	4.9E-13	54	102	IPR001005	SANT/Myb domain
Pfam	PF00249	9.1E-14	55	98	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.0E-9	55	95	IPR009057	Homeodomain-like
CDD	cd00167	4.23E-10	57	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0010600	Biological Process	regulation of auxin biosynthetic process
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MASSPLTANV QGTKAPSSNR SEETADKQIQ FNEQVFEGND YAPKVRKPYT ITKERERWTD 60 EEHKKFVEAL KLYGRAWRRI EEHVGTKTAV QIRSHAQKFF SKVAREATGG NGSSLEPILI 120 PPPRPKRKPM HPYPRKLGNE GDQTSRSVSP SERESRSPTS VLSTVGSEAL GSSDSHSPNR 180 SLSPVSSASP QAALANTANA PEDLDTLKLE LFPRERLLNG ESSTKEPMKQ SLKLFGKTVL 240 VSDSGMSSSL TTSTTYCKSP IQPLPRKLSQ SETFPMIINP QEELLSCWIQ VAPKQEEVDN 300 RCLDSEKAVQ NEGSSTGSNT GSVDDTGHMD KSSEPETMVC QWEFKPSERS AFSELRRTNS 360 QSNSRGFGPY KKRKMVIEAE QEQEEQQIHL CL

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MASSPLTANV QGTKAPSSNR SEETADKQIQ FNEQVFEGND YAPKVRKPYT ITKERERWTD  60
EEHKKFVEAL KLYGRAWRRI EEHVGTKTAV QIRSHAQKFF SKVAREATGG NGSSLEPILI  120
PPPRPKRKPM HPYPRKLGNE GDQTSRSVSP SERESRSPTS VLSTVGSEAL GSSDSHSPNR  180
SLSPVSSASP QAALANTANA PEDLDTLKLE LFPRERLLNG ESSTKEPMKQ SLKLFGKTVL  240
VSDSGMSSSL TTSTTYCKSP IQPLPRKLSQ SETFPMIINP QEELLSCWIQ VAPKQEEVDN  300
RCLDSEKAVQ NEGSSTGSNT GSVDDTGHMD KSSEPETMVC QWEFKPSERS AFSELRRTNS  360
QSNSRGFGPY KKRKMVIEAE QEQEEQQIHL CL

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00515	DAP	Transfer from AT5G17300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g26930

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353109	0.0	AK353109.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-B24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_568344.2	0.0	Homeodomain-like superfamily protein
Swissprot	F4KGY6	0.0	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	R0FFU0	0.0	R0FFU0_9BRAS; Uncharacterized protein
STRING	AT5G17300.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6356	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	1e-180	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]