PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g28860
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ZF-HD
Protein Properties Length: 259aa    MW: 28424 Da    PI: 8.7012
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g28860genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.65.4e-3253110359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                   ++YkeClkNhAa++Ggha+DGCgEf+ps + + +++++l+CaACgCHRnFHRre ++
    Tp6g28860  53 VATYKECLKNHAARIGGHALDGCGEFIPSASFNsNDPTSLTCAACGCHRNFHRREDDQ 110
                  579**************************9999889******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-2552107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.6E-3155107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.1E-2755108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.66356107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.82E-17167230IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-26171229IPR009057Homeodomain-like
TIGRFAMsTIGR015655.7E-24173229IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDVIATTATI VSDLDTRQPE IEAPTRIHPA KPISFSNAKR CRHHHDHLAF EAVATYKECL  60
KNHAARIGGH ALDGCGEFIP SASFNSNDPT SLTCAACGCH RNFHRREDDQ SSVSALIPAI  120
EFRPHNRHQL PQPPPTVGIR SPDDDYSASP PPISSSYMLL ALSGGATAVP LSRKRFRTKF  180
SQFQKEKMFE FAERVGWRMP KADDVSVIEF CREIGVEKSV FKVWMHNNKI PGRGGAKRAN  240
GGGGDGRESV PTNGSFSST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-211722321676ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g28860
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533230.0AK353323.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-M06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400038.11e-145zinc-finger homeodomain protein 8
SwissprotQ9LXG01e-141ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLE4MXS61e-144E4MXS6_EUTHA; mRNA, clone: RTFL01-24-M06
TrEMBLV4N7A51e-144V4N7A5_EUTSA; Uncharacterized protein
STRINGXP_006400038.11e-145(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-130homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]