PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g30000
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 212aa    MW: 24097.3 Da    PI: 8.9265
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g30000genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.91.8e-31151411128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevlskkgel 99 
                lp G+rFhPt++el+ +yL +k+ +++l+  ++i+ +d++ ++P ++p   +++ek+ yfF+k++++ + +++r + +  +gyWk   k++e+++  g+ 
  Tp6g30000  15 LPIGYRFHPTEQELILHYLLPKAFASPLPS-SIIPVFDVFFSHPLTFPG--DQKEKQRYFFCKKRSEVSsNEHRIKISSGDGYWKPAEKEREIIA-CGRI 110
                699*************************99.88***************4..4577899****999888724566666899***************.99** PP

        NAM 100 vglkktLvfy..kgrapkgektdWvmheyrl 128
                vg+++tL fy  ++ +++ +kt+W m ey+l
  Tp6g30000 111 VGIRRTLSFYgtNNCSSNCNKTRWSMTEYSL 141
                **********6555677889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-3710161IPR003441NAC domain
PROSITE profilePS5100535.81915161IPR003441NAC domain
PfamPF023654.4E-2016141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEVEKRIMVN GGMKLPIGYR FHPTEQELIL HYLLPKAFAS PLPSSIIPVF DVFFSHPLTF  60
PGDQKEKQRY FFCKKRSEVS SNEHRIKISS GDGYWKPAEK EREIIACGRI VGIRRTLSFY  120
GTNNCSSNCN KTRWSMTEYS LAGLASAKAF GEWAVYNVYE KKGSRERRQR KSRGRDDEED  180
LSCIHFTIGS DHETGPPPPS PPTSADESGN II
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-181316713174Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g30000
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667600.0KC966760.1 Brassica napus NAC transcription factor 84 (NAC84.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399904.11e-128NAC domain-containing protein 41
TrEMBLV4LG111e-126V4LG11_EUTSA; Uncharacterized protein
STRINGXP_006399904.11e-127(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.11e-111NAC domain containing protein 84