PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g33650
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 210aa    MW: 23853.8 Da    PI: 6.5886
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g33650genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.1e-09128168954
                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Tp6g33650 128 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 168
                699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.091119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-14124177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-12124176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-6129168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-5142173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MNNNNMNPSL FQNYTWNNIL INKNDHHHHN DPIGMAMDQH THLHIFNPFT SSSSHFPPLS  60
SSHTTTTLFS GDQEDDEDEE EPVEELGAMK EMMYKIAAMQ PVDIDPATVK KPKRRNVRIS  120
DDPQSVAARH RRERISERIR ILQRLVPGGT KMDTASMLDE AIRYVKFLKR QIRLLNNHPP  180
PQDQASQAMT TSWVSPPPPP DFGGGGGELI
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g33650
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545971e-162AC254597.1 Capsella rubella clone CAP08-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125350.11e-113PREDICTED: transcription factor HEC3
RefseqXP_013712271.11e-113transcription factor HEC3
SwissprotQ9LXD83e-89HEC3_ARATH; Transcription factor HEC3
TrEMBLA0A398A5Q21e-113A0A398A5Q2_BRACM; Uncharacterized protein
STRINGBra028620.1-P1e-112(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44492754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.16e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]