PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g35820

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

NF-YC

Protein Properties

Length: 298aa MW: 33258.3 Da PI: 5.3334

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g35820	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56.5	6.1e-18	6	85	18	97
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l ++ + + +t+ ++++v+r ++fdfl d Tp6g35820 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDHTYEITLQRGAKTVSSLHLKNCVERYNVFDFLRDLAS 85 5789************************************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.6E-25	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.19E-19	4	104	IPR009072	Histone-fold
Pfam	PF00808	4.3E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDHT YEITLQRGAK 60 TVSSLHLKNC VERYNVFDFL RDLASKVPDY GHGHGHGHGP ADVTMDDRSI SKRRKPTGDE 120 ANESDEELKK TKVQEMGQAG PSGRGRGRGR GRGRGRSART AERELLHREM EIEPTILLAP 180 PLTQDGITIP TPPPELPRQD SVKKDLDDMS NQPKQELQSP KEGNDTNTGL GRDFDLNLNT 240 QSLDIEIKPP VVTASRETKP EKYPGWSISD IGNIDPMQLA SMGKRLDEDE EDYDEEEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-19	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	154	RGRGRGRGRG
2	145	155	RGRGRGRGRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g35820

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC818622	7e-44	KC818622.1 Brassica napus transcription factor subunit NF-YC11A (NF-YC11A) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006399184.1	1e-154	dr1-associated corepressor isoform X1
TrEMBL	V4LE09	1e-153	V4LE09_EUTSA; Uncharacterized protein
STRING	XP_006399184.1	1e-153	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3506	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-95	nuclear factor Y, subunit C11