PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g36050

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

G2-like

Protein Properties

Length: 134aa MW: 15472.9 Da PI: 10.163

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g36050	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96	2.8e-30	27	81	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt++LH++F+++v++LGG+ kAtPk il+lm + Lt++hvkSHLQkYR+ Tp6g36050 27 KTRIKWTTDLHDKFLDCVNHLGGPMKATPKGILKLMRTNELTIYHVKSHLQKYRS 81 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.704	24	84	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-15	26	81	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.6E-27	26	83	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.6E-24	27	81	IPR006447	Myb domain, plants
Pfam	PF00249	5.7E-8	31	80	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MAEKEQPSTR SSSCESACEL TCPSSIKTRI KWTTDLHDKF LDCVNHLGGP MKATPKGILK 60 LMRTNELTIY HVKSHLQKYR SLKHVQDSIQ GTRFKEEKIN PKGSRIKELM RLQDEVGQHL 120 QEQLEKSRIR VIKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-21	27	84	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-21	27	84	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-21	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-21	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-21	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-21	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-21	27	84	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-21	27	84	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-21	27	84	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-21	27	84	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-21	27	84	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-21	27	84	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g36050

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018511282.1	2e-56	PREDICTED: myb family transcription factor PHL5-like isoform X2
Swissprot	Q0WVU3	3e-27	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A087G5B6	7e-59	A0A087G5B6_ARAAL; Uncharacterized protein
STRING	A0A087G5B6	1e-59	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19527	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.2	4e-30	G2-like family protein