PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g36060
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family G2-like
Protein Properties Length: 372aa    MW: 41905.8 Da    PI: 7.2576
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g36060genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1001.6e-31197251155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                k+r+rWt++LHe+Fve+v+ LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  Tp6g36060 197 KTRIRWTQDLHEKFVECVNCLGGADKATPKAILKLMDSDGLTIFHVKSHLQKYRI 251
                68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.215194254IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-28196252IPR009057Homeodomain-like
SuperFamilySSF466893.05E-17196251IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-23197252IPR006447Myb domain, plants
PfamPF002493.0E-7201250IPR001005SANT/Myb domain
PfamPF143795.6E-21281328IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDNINFESST ASQGSPLQLQ SQPQPPQPFN LQDMNMIHYN QSSPWTNETF SGFTPYDCTA  60
NQSFSVQCSS SKPYPASFHP HHHQSLDPPS LDQSQSMVLM QPLPDPYLKP LYQRSCAHDF  120
AATNASSASY SLSFEASQDP QELCRRTYSN SNVTELNFSS SHHHQPKQTH PRFSSPPSFS  180
THGGSMAPNC GTVIGNKTRI RWTQDLHEKF VECVNCLGGA DKATPKAILK LMDSDGLTIF  240
HVKSHLQKYR IAKYIPDSQE GKFEKRSCSK DLSQLDTKTG VQIKEALKLQ LDVQRHLHEQ  300
LEIQRNLQLR IEEQGKQLKR MIEQQQKTKE CLLKTPNAEA SLSLSDHSSP PFSVQDAEAL  360
MLTSETLNSN QR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g36060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2266440.0AK226644.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-39-G11.
GenBankBT0126580.0BT012658.1 Arabidopsis thaliana At5g06800 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468228.10.0PREDICTED: myb family transcription factor PHL5-like
SwissprotQ0WVU30.0PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLA0A3P6AKJ90.0A0A3P6AKJ9_BRACM; Uncharacterized protein
STRINGBo2g007410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54762748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.10.0G2-like family protein