PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g36360
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 251aa    MW: 28474.2 Da    PI: 5.4679
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g36360genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.22.5e-141160351
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE- CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeyss 51
               i n++ r+    kR +g++KKA EL +LC++ +++i fs  ++kl  ++s
  Tp6g36360 11 IANQRARKSACKKRMQGLMKKADELTILCNMSACLIFFSRdDNKLVAWPS 60
               88999**********************************72578998885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-13160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.152149IPR002100Transcription factor, MADS-box
CDDcd002668.88E-23285No hitNo description
PRINTSPR004047.8E-6323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-20394IPR002100Transcription factor, MADS-box
PfamPF003193.4E-151158IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MARAKLKFTW IANQRARKSA CKKRMQGLMK KADELTILCN MSACLIFFSR DDNKLVAWPS  60
QEVAKSLVDR FFSLPDIERN MKAEDQESFI KTNTKKIEKK LADSRKVIAE LEMDHLMLQL  120
QNGRRLVDLS ETEIENLISY STKKITGLRR ELGYTEHPYT SVNEPSLGVE TPRASDPGSE  180
WGHCFTPMGS GSIYLMDKWV PDDPEVQKHG DETHLPSMAS RFNLNLEPSD DDDDMETYKG  240
ESSKSGGADD A
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g36360
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399123.11e-127MADS-box transcription factor PHERES 2
TrEMBLV4N5601e-126V4N560_EUTSA; Uncharacterized protein
STRINGXP_006399123.11e-127(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.11e-79AGAMOUS-like 96