PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g37110
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 273aa    MW: 30999.9 Da    PI: 7.6283
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g37110genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53.1e-082974346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE +++ +a + +  +   +W ++a++++ g+t  ++   + k
        Tp6g37110 29 SWTQEENKKFERALAIYADDtpdRWFKVAAMIP-GKTISDVMRQYSK 74
                     7*****************99*************.******9998877 PP
2Myb_DNA-binding409.1e-13133177347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
        Tp6g37110 133 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVGSKTPTQVASHAQKY 177
                      8****************************999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-42573IPR009057Homeodomain-like
PROSITE profilePS512937.7522578IPR017884SANT domain
SMARTSM007176.0E-82678IPR001005SANT/Myb domain
SuperFamilySSF466895.53E-112882IPR009057Homeodomain-like
CDDcd001671.29E-72975No hitNo description
PfamPF002495.1E-72974IPR001005SANT/Myb domain
PROSITE profilePS5129418.108126182IPR017930Myb domain
SuperFamilySSF466891.08E-15128181IPR009057Homeodomain-like
SMARTSM007179.9E-11130180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-11130182IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-16130181IPR006447Myb domain, plants
CDDcd001677.01E-10133177No hitNo description
PfamPF002493.9E-10133177IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
METLHPLVLS HVPTSDHRFV VQEMMQSSSW TQEENKKFER ALAIYADDTP DRWFKVAAMI  60
PGKTISDVMR QYSKLEEDLF DIEAGLVPIP GYPSATLCGF DQLVSPRDFD LYRKRPNGGG  120
AREFDQDRRK GVPWTEEEHR RFLLGLLKYG KGDWRNISRN FVGSKTPTQV ASHAQKYYQR  180
QLSGAKDKRR PSIHDITTVN LLNNNLSRPS SDHDCFLQKP AEPKLGFTDR DNAAEGVMFL  240
GQSLSSVLSP YDPAFKFSAE NVYGDGGFCI TRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1530921173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00489DAPTransfer from AT5G05790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g37110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195310.0AY519531.1 Arabidopsis thaliana MYB transcription factor (At5g05790) mRNA, complete cds.
GenBankBT0260540.0BT026054.1 Arabidopsis thaliana At5g05790 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445578.11e-179PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-73DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLQ9FFJ91e-177Q9FFJ9_ARATH; At5g05790
STRINGAT5G05790.11e-178(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.11e-176MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]