PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g37230
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NF-X1
Protein Properties Length: 829aa    MW: 92962.8 Da    PI: 8.3917
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g37230genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.31.2e-06243271220
   zf-NF-X1   2 G..........kHkCqklCHeGpCppCpq 20 
                G          +HkC ++CH G+CppC++
  Tp6g37230 243 GnvcdsvldcdIHKCREICHDGECPPCRE 271
                555555555559***************85 PP
2zf-NF-X116.61.7e-05359378119
   zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                CG H+C + CH+GpC + C+
  Tp6g37230 359 CGYHRCPERCHRGPCLEtCR 378
                *****************997 PP
3zf-NF-X118.83.6e-06433457119
   zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                CG      +HkCq++CH GpC pCp
  Tp6g37230 433 CGkrlrcrNHKCQSPCHQGPCAPCP 457
                777777779***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359089153IPR019786Zinc finger, PHD-type, conserved site
CDDcd060086.20E-5188236No hitNo description
PfamPF014222.3200217IPR000967Zinc finger, NF-X1-type
SMARTSM004388.1200218IPR000967Zinc finger, NF-X1-type
CDDcd060081.82E-8242290No hitNo description
PfamPF014222.1E-4252270IPR000967Zinc finger, NF-X1-type
SMARTSM004381.2E-4252271IPR000967Zinc finger, NF-X1-type
CDDcd060087.09E-7295335No hitNo description
PfamPF014220.044305323IPR000967Zinc finger, NF-X1-type
SMARTSM004380.038305324IPR000967Zinc finger, NF-X1-type
CDDcd060084.45E-9349398No hitNo description
PfamPF014220.0012359378IPR000967Zinc finger, NF-X1-type
SMARTSM004380.035359379IPR000967Zinc finger, NF-X1-type
CDDcd060089.60E-7402450No hitNo description
PfamPF014220.034412430IPR000967Zinc finger, NF-X1-type
SMARTSM004380.33412431IPR000967Zinc finger, NF-X1-type
CDDcd060087.87E-11429477No hitNo description
PfamPF014225.7E-4433457IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0034439458IPR000967Zinc finger, NF-X1-type
SMARTSM0043876496517IPR000967Zinc finger, NF-X1-type
PfamPF014224.5506516IPR000967Zinc finger, NF-X1-type
PfamPF0142238525534IPR000967Zinc finger, NF-X1-type
SMARTSM00438110525543IPR000967Zinc finger, NF-X1-type
SMARTSM004380.41592610IPR000967Zinc finger, NF-X1-type
PfamPF0142215593609IPR000967Zinc finger, NF-X1-type
SMARTSM0043823655676IPR000967Zinc finger, NF-X1-type
PfamPF014222.5657669IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MSDMAGRATT DFRWKSPPQP QPPPQQQNIS ESDSDSGSDT DHHQHRHNDL SNSIFKAYLD  60
CHSSSSPSSI DLAKIQSFLA SSSSGAVSCL ICLERIKRTD PTWSCTSSCF AVFHLFCIQS  120
WARQCLDLQA ARAVTRPSST PNEPEAVWNC PKCRSSYNKT AIPRRYLCYC GKEEDPPADN  180
PWILPHSCGE VCERPLSNNC GHCCLLLCHP GPCASCPKLV KAKCFCGGVE DVRRCGHKLF  240
SCGNVCDSVL DCDIHKCREI CHDGECPPCR ERAVYRCCCG KVKEEKDCCE RVFRCEASCE  300
SMLNCGKHVC ERGCHSGECG LCPYQGKRSC PCGKKFYQGL SCDVAAPLCG GTCDKILGCG  360
YHRCPERCHR GPCLETCRIV VTKSCRCGGT RKQVPCHQDL ACERKCQRVR DCARHACRRR  420
CCDGECPPCS EICGKRLRCR NHKCQSPCHQ GPCAPCPIMV SISCACGETH FEVPCGTETN  480
QKPPRCRKLC HITPLCRHGQ NQKPHKCHYG ACPPCRLLCD EEYPCGHKCN LRCHGPRPPP  540
KREFMIKPTK KMLNIQAEST PGSPCPRCPE LVWRPCVGHH LAAEKMERTP RCQHPCPRRC  600
HPEDCPPCKT LVKRACHCGT MVHAFECIYY NTLSEKDQTK ARSCRGPCHG KLPNCTHLCP  660
EICHPGQCPL PEKCVKKVVV RCKCLTLKKE WLCKDVQAAH RATGSDPKDV VPKNQFGVGL  720
LPCDSNCKSK LQMAESVLQQ RNVKEIEKEE PSGKNATKRR KRRERGQDIK ETSRLQKLAV  780
ATKKVVMLVM LIAVLVAVSF YGYKGLLWLS DWMNEIEEQR QKSRRYPRI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g37230
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529480.0AK352948.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-B22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399023.20.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLV4N4Z00.0V4N4Z0_EUTSA; Uncharacterized protein
STRINGBostr.13129s0405.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors