PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g37320
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Trihelix
Protein Properties Length: 251aa    MW: 28542.5 Da    PI: 9.5475
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g37320genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.24.9e-1433114286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                W+++ + +Li+a   +  rl+ g+l++++W+e+++++   +  g  ++  qCk++++ l+k+yk++k+  +       s +++f++l+
  Tp6g37320  33 WSEDATATLIQAWGHRFLRLNFGNLRQNDWKEIADAVnssHGNGRPKTDAQCKNRIDTLKKKYKAEKAKLSP------SAWRFFHRLD 114
                *************************************9666667788********************99986......57*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.9E-2531115No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
METTTPPPAT QSKPHQPISS GSHRPPVGRE DWWSEDATAT LIQAWGHRFL RLNFGNLRQN  60
DWKEIADAVN SSHGNGRPKT DAQCKNRIDT LKKKYKAEKA KLSPSAWRFF HRLDVLIGPV  120
LKKPASGDVK STSLNPYLSL TGSKYTESSL DDDDEEAGDW GFVARKHPRL EEVDLSDGLA  180
CKELARAILK LAEVYERIEG TKQKMMIELE KQRMEVVKEL ELQRMNMLME MQLELEKSKN  240
RKRGDGSGKK L
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g37320
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467560.11e-133PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A0D3EHL11e-120A0A0D3EHL1_BRAOL; Uncharacterized protein
TrEMBLA0A397XYC91e-120A0A397XYC9_BRACM; Uncharacterized protein
TrEMBLA0A3P6EDP81e-120A0A3P6EDP8_BRAOL; Uncharacterized protein
STRINGBo9g177060.11e-121(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-102sequence-specific DNA binding transcription factors