PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g37720
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 209aa    MW: 23408 Da    PI: 5.0549
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g37720genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000263456123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C++C+k++s    L  H++ H
  Tp6g37720 34 YRCKYCPKMYSKIQALGGHQNAH 56
               9***********99999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.93E-63161No hitNo description
PROSITE profilePS5015710.973461IPR007087Zinc finger, C2H2
PfamPF139122.9E-53458IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDPVDVDMIS SDSSYTSDVS DDGSATEWID KPKYRCKYCP KMYSKIQALG GHQNAHKRER  60
EIIERQNRAI TRINQHDPDP YPNPSPYPVP SQYALPPGFE QPRFAVDRPD NLAVVYNHCI  120
GSSKYDFARL GIDSSRGWAI NGNSYQSVVA QTQLQPLLST SSPICLDLCL GVGNNSQPQV  180
QSKEPFDTTE KITDEKENDD HSLSLSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g37720
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871138.23e-62zinc finger protein 5
TrEMBLA0A0D3AZT37e-58A0A0D3AZT3_BRAOL; Uncharacterized protein
TrEMBLA0A3N6R5297e-58A0A3N6R529_BRACR; Uncharacterized protein
TrEMBLM4CNQ25e-58M4CNQ2_BRARP; Uncharacterized protein
TrEMBLQ9FF629e-58Q9FF62_ARATH; C2H2 and C2HC zinc fingers superfamily protein
STRINGBostr.13129s0453.1.p2e-61(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157411316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.18e-49C2H2 family protein