PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g38060
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 218aa    MW: 24518.3 Da    PI: 6.8713
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g38060genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.11e-1397141347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E++l++ + k++G+g+W++I+r +   Rt+ q+ s+ qky
        Tp6g38060  97 PWTELEHKLFLVGLKKYGKGDWRSISRNVVVSRTPTQVASHAQKY 141
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.356154IPR017884SANT domain
SMARTSM007172.2E-4253IPR001005SANT/Myb domain
SuperFamilySSF466892.32E-11459IPR009057Homeodomain-like
CDDcd001672.00E-5651No hitNo description
PROSITE profilePS5129417.02590146IPR017930Myb domain
SuperFamilySSF466891.87E-1592146IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-1693145IPR006447Myb domain, plants
SMARTSM007177.5E-1194144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-1096140IPR009057Homeodomain-like
CDDcd001671.31E-997142No hitNo description
PfamPF002491.7E-1197141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MASSQWTRAE DKMFEQALVL FPEEFPSRWE KIADQLHKSV AEVMDHYEAL VHDVLEIDSG  60
RVVVPDYVDD SAAGWDSAGQ ISFGSKHGEG ERKRGTPWTE LEHKLFLVGL KKYGKGDWRS  120
ISRNVVVSRT PTQVASHAQK YFLRQNSGKK ERKRSSIHDI TTVDPTLAMP GSTMDWSGQH  180
NSPSVQSQQH DSPPVQAQQP QHKASEFGQQ LAPGYFGM
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g38060
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873168.11e-124transcription factor DIVARICATA
SwissprotQ8S9H72e-56DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLD7LXM51e-122D7LXM5_ARALL; Uncharacterized protein
STRINGscaffold_600421.11e-123(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-115MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]