PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g39240
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 278aa    MW: 29896.8 Da    PI: 8.2457
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g39240genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0017111133123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ C+ksF +   L  H  +H
  Tp6g39240 111 YQCKTCDKSFHSFQALGGHRASH 133
                9*********9988888887776 PP
2zf-C2H211.60.00088186208123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C+  Fs+   L  H+r+H
  Tp6g39240 186 HECSICKAEFSSGQALGGHMRRH 208
                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.31E-9110133No hitNo description
SMARTSM003550.041111133IPR015880Zinc finger, C2H2-like
PfamPF139129.3E-12111135IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.45111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576672.31E-9181208No hitNo description
Gene3DG3DSA:3.30.160.605.2E-4183210IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-12185210IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328186213IPR007087Zinc finger, C2H2
SMARTSM003550.031186208IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MTSVHEETRL VLLIKGKRTK RQRSASPHIN AEAVSGVCSG ERSLEAREEE AGEVEFQGAT  60
DEDQDMANCL MLLSQGHKAK SSGNHLTTQK IGFLSNKKPL ASLGLGLDGI YQCKTCDKSF  120
HSFQALGGHR ASHKKPKLGA IVLKCDEKKS ASASASETVE AAGVVGSFLS LQVTSSDGSK  180
KPEKTHECSI CKAEFSSGQA LGGHMRRHRG LTVNANATSP IKTAIPSSHH QESIRPKNFL  240
ELDLNLPAPE DEPKFVFASK DQILLFAAAS NSLIDCHH
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g39240
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325220.0AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398801.11e-176zinc finger protein ZAT5
RefseqXP_022553406.11e-176zinc finger protein ZAT5-like
TrEMBLV4L9C21e-174V4L9C2_EUTSA; Uncharacterized protein
STRINGXP_006398801.11e-175(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-139C2H2 family protein