PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g40120
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 144aa    MW: 16271.4 Da    PI: 9.273
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g40120genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605.1e-1976122148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av ++ g++Wk+Ia+ ++  Rt+ qc +rwqk+l
        Tp6g40120  76 KGGWTPEEDETLRQAVDKYKGKRWKKIAEFFP-DRTEVQCLHRWQKVL 122
                      688*****************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.33871126IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-2272133IPR009057Homeodomain-like
SuperFamilySSF466893.34E-1973134IPR009057Homeodomain-like
SMARTSM007172.1E-1675124IPR001005SANT/Myb domain
PfamPF002491.4E-1776122IPR001005SANT/Myb domain
CDDcd001671.25E-1579122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MSSNSNPATG SPEKEEISEL KVEIHCMENK QPTPVSCSSA SEGSGNFFLK SPEITTPAAT  60
ASPTPRRTSG PMRRAKGGWT PEEDETLRQA VDKYKGKRWK KIAEFFPDRT EVQCLHRWQK  120
VLNPELVKGP WTQEVFTRSY RQAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-1975134564MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-1975134564MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g40120
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196491e-125AY519649.1 Arabidopsis thaliana MYB transcription factor (At5g02320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_179013.21e-77Homeodomain-like superfamily protein
RefseqXP_006287439.11e-75transcription factor MYB3R-5
SwissprotQ6R0324e-74MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLQ29PZ83e-76Q29PZ8_ARATH; At2g13960
TrEMBLR0FDT22e-74R0FDT2_9BRAS; Uncharacterized protein
STRINGBostr.6251s0040.1.p6e-78(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3044222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13960.16e-72MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]