PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g41100
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 236aa    MW: 26373.4 Da    PI: 7.0182
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g41100genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001783105123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C+ C+k Fs++  L  H++ H
  Tp6g41100  83 FACTFCKKEFSTSQALGGHQNAH 105
                78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.65E-680110No hitNo description
Gene3DG3DSA:3.30.160.605.0E-581109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.1E-682107IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.65583110IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MELNLTTPTT CSSSSISSSS HEMGFLTDTK GKMKEKIAAE AAIETPRLEF SFLFNNDKIR  60
NSGFGVLEDE AEGTKKEAKA RVFACTFCKK EFSTSQALGG HQNAHKQERS LAKRRKEIEI  120
NYPGLSFYSQ YPPPSGVSYS SPYDLGVRYN PNVGKSKAYP LNIFRCRLGY RGLNINSHIP  180
LLSNLSCQKT DDFSKNLISN LEANDSHVIK EEQGEKQDQS DTDSYQDSEI DLSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g41100
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125391.11e-131PREDICTED: uncharacterized protein LOC103850401
TrEMBLA0A398AC281e-130A0A398AC28_BRACM; Uncharacterized protein
TrEMBLM4EJE81e-130M4EJE8_BRARP; Uncharacterized protein
STRINGBra028914.1-P1e-131(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87382636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.12e-58C2H2 family protein