PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g41150
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 261aa    MW: 30246.4 Da    PI: 6.7624
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g41150genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.52.8e-23109169259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dg+ WrKYGqK++k+s++ rsYY+C+++   +C++kk+v+  +++p +  +tY g+H+++
  Tp6g41150 109 HDGFLWRKYGQKQIKESDHQRSYYKCAYTkdqNCEAKKQVQMIQDNPPLYSTTYFGHHTCQ 169
                6**************************988899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.9E-24101169IPR003657WRKY domain
PROSITE profilePS5081119.152103171IPR003657WRKY domain
SuperFamilySSF1182903.4E-23105170IPR003657WRKY domain
SMARTSM007742.5E-34108170IPR003657WRKY domain
PfamPF031062.6E-23110169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MKSCQQKAME TLLHGHGCAN KLKLIMESDS SMEREDLAKS VLHCFSDALS ILIDTSDHQQ  60
EDQSNISSPQ DSSPVLESSR KLLHKRGRKT SMAESSDYRR HESPNPIYHD GFLWRKYGQK  120
QIKESDHQRS YYKCAYTKDQ NCEAKKQVQM IQDNPPLYST TYFGHHTCQL HQAYATFPID  180
TSDPQDSHMI RFDHPNSSTH QHQHQHQNQN QNQIIHLKDE HMMSPERVEE WSSPSQWMSS  240
EVAHAVEAFG FNPFRTSSDL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-151101691069OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g41150
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300690.0KF430069.1 Brassica rapa WRKY transcription factor 62 (WRKY62) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013728064.11e-162probable WRKY transcription factor 62
SwissprotQ9LZV61e-139WRK62_ARATH; Probable WRKY transcription factor 62
TrEMBLA0A398A4V11e-161A0A398A4V1_BRACM; Uncharacterized protein
STRINGBra023211.1-P1e-156(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145051522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.11e-139WRKY DNA-binding protein 62