PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g00470

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

WRKY

Protein Properties

Length: 178aa MW: 20715.3 Da PI: 7.9916

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g00470	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.9	7.8e-32	96	154	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++ +prsYYrCt+++C+vkk+v+r a+d +vv++tYeg Hnh+ Tp7g00470 96 LDDGYRWRKYGQKSVKNNGHPRSYYRCTYHTCNVKKQVQRLAKDSNVVVTTYEGIHNHP 154 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.6E-32	83	154	IPR003657	WRKY domain
SuperFamily	SSF118290	4.18E-28	88	155	IPR003657	WRKY domain
PROSITE profile	PS50811	28.759	91	156	IPR003657	WRKY domain
SMART	SM00774	1.8E-36	96	155	IPR003657	WRKY domain
Pfam	PF03106	1.6E-25	97	154	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MERQDIDHML SLDVENNDVN TFSSFVDKTL MMMPPLTYSG EVEPSSSSWC PTSFHVPTQP 60 LENDQIGDEG KKKEKEKRSR KVPRIAFHTR SDDDVLDDGY RWRKYGQKSV KNNGHPRSYY 120 RCTYHTCNVK KQVQRLAKDS NVVVTTYEGI HNHPCEKLME TLNPLLRQLQ FLSSFSNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-25	86	153	7	74	Probable WRKY transcription factor 4
2lex_A	8e-25	86	153	7	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00539	DAP	Transfer from AT5G41570	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g00470

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430042	0.0	KF430042.1 Brassica rapa WRKY transcription factor 24 (WRKY24) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013635201.1	1e-111	PREDICTED: probable WRKY transcription factor 24
Refseq	XP_013743457.1	1e-111	probable WRKY transcription factor 24
Refseq	XP_013746877.1	1e-111	probable WRKY transcription factor 24
Swissprot	Q9FFS3	1e-103	WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBL	V5RH05	1e-112	V5RH05_BRACM; WRKY transcription factor 24
STRING	Bo4g142200.1	1e-110	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM509	28	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41570.1	4e-88	WRKY DNA-binding protein 24