PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g00890
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 739aa    MW: 83466.2 Da    PI: 6.3202
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g00890genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-09529571146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g W++e+ el + + k++G++ WktIa  mg  + +k++k+ w+ 
        Tp7g00890 529 KGVWSEEDFELVIGYQKKHGND-WKTIADAMG--KHRKHVKDAWRR 571
                      799*******************.********9..7899***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.084455526IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-4455519IPR009057Homeodomain-like
PROSITE profilePS500904.519458524IPR017877Myb-like domain
SMARTSM007170.0013528575IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-7528571IPR009057Homeodomain-like
SuperFamilySSF466892.04E-8529590IPR009057Homeodomain-like
PROSITE profilePS500907.05529573IPR017877Myb-like domain
PfamPF139218.0E-11532590No hitNo description
CDDcd001670.00396532572No hitNo description
PROSITE profilePS500906.655574642IPR017877Myb-like domain
SMARTSM0071780578644IPR001005SANT/Myb domain
PROSITE profilePS500907.085644697IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MMRANFFNSD PSESDTDDER KKSKVTVDEV VAEPNSMKKK TKKKKNLESK DSFAGEAGEI  60
AAPDREKLKK KSEEESVDTE ADDDGGKKSK KTNKHKKQSG GYEIGSSKVN ESGEGNRSDE  120
EALVSTDDGG KKSKKSKVTV DEVVAEPNSM KKKKKNRESK DIFAGEDGEL AARDREKLKK  180
KSEEESVSSE ADDDGGKKSK KTKKHKKQSG GDEIGNSESS KVNEEALVST DNDGGKKSKK  240
KKKHKKQFGG DVIGSSKVHE GGEGNRSGEE ALVATDDDAK RETGKRKRVD SDLGAEEENT  300
EKHSKKKKPS VDSEIEENSL SSAKKKRKKK NPSPDAEENN NEGTKDAEKL SKEQEQSEDP  360
EVEDNNKGST EVAKKKRKKK QSEDSEAEEN NNDGTKDGKK KREKKQKGTK SDEVVTTPSS  420
KSAKKVKFSD QVEVFPTEDE ESEAEEDEEG VELVRGKRFT KEEDELIKKA VLEYVENHAL  480
GDEGINMVMD CKSHPEIKGC WKEITSALPW RPHSGVYNRA HTIFEQGSKG VWSEEDFELV  540
IGYQKKHGND WKTIADAMGK HRKHVKDAWR RIRLASKKKG HWSREEYQNL FDLVNKDLRV  600
KAFQEKRAKH GMLRDNIPWM AISDELRTRD HTICCIKWYD QLTSPMVVKG IWANVDDYRL  660
LDELTNLDAA CVDDVDWDDL LDNRDGDTCR KRWDQMVHHI GLPGTKTFAE QVEILSQRYC  720
PDIAEDREDF DNRPFDPEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305327KKKPSVDSEIEENSLSSAKKKRK
2373379KKKRKKK
3374378KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g00890
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405405.10.0ABC transporter F family member 4
TrEMBLA0A1J3FAK80.0A0A1J3FAK8_NOCCA; Transcription termination factor 1
STRINGXP_006405405.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-177MYB_related family protein