PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g01480
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 303aa    MW: 35000 Da    PI: 6.4416
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g01480genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.9e-16140182145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +W++eEd++lv  +k  G++ W++Ia++++ gR+++ +k+rw+
        Tp7g01480 140 KEAWSEEEDQILVATHKVCGNK-WTKIAQKLP-GRSENAIKNRWN 182
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-24116189IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-12117143IPR009057Homeodomain-like
PROSITE profilePS500904.565118134IPR017877Myb-like domain
PROSITE profilePS5129423.374135189IPR017930Myb domain
SMARTSM007179.0E-15139187IPR001005SANT/Myb domain
PfamPF002493.6E-14140182IPR001005SANT/Myb domain
CDDcd001673.87E-11142185No hitNo description
Gene3DG3DSA:1.10.10.607.5E-19144187IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDSYLKANSF GESMNNISNN NKHYMTYNTP LYAEPKGIFD HFHNFRGNTM WDNIIHNKRP  60
NTSCYEPILD NFIVESHPFD LPVLEGIRST TTEINHTGDR ETNKKLGKKS KPLRKDMLGR  120
RQGKQCRERW HNHLRLDIKK EAWSEEEDQI LVATHKVCGN KWTKIAQKLP GRSENAIKNR  180
WNATKRRMHL MKIKQRHEIA NPPQNDILEN YISQVTISND PPKANETAGT TTTTKDDDEN  240
DDAMDGEMNL SVDVATQTAE PSANISTTSG SVLEPTTTFL WDDYFKELFD SMDDSEMFMQ  300
GWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-2610118720106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g01480
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479665.15e-75PREDICTED: transcription factor MYB98
TrEMBLV4NKM83e-84V4NKM8_EUTSA; Uncharacterized protein
STRINGXP_006405493.15e-85(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133031427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40360.14e-53myb domain protein 115