PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g01690

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

HD-ZIP

Protein Properties

Length: 156aa MW: 18292.2 Da PI: 9.6563

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g01690	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.7	2.7e-15	19	64	11	56
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ Le+ Fe+++++ +++ eLAkklgL++rqV +WF Nr+a+ k Tp7g01690 19 EVNLLEKSFEEENKLEPKRKIELAKKLGLPQRQVAIWFLNRKARFK 64 6789****************************************88 PP
2	HD-ZIP_I/II	103	2.5e-33	18	102	9	93
HD-ZIP_I/II 9 eqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 v+lLE+sFeee+kLep+rK ela++Lgl +rqva+WF nr+AR+k k++E+dy+ Lk++yd+l +++e++ +e+e+L++++++ Tp7g01690 18 SEVNLLEKSFEEENKLEPKRKIELAKKLGLPQRQVAIWFLNRKARFKFKKIERDYDILKACYDSLLAKHESVISENEKLKSKVST 102 5699****************************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.4E-8	12	70	IPR001356	Homeobox domain
CDD	cd00086	1.16E-10	17	64	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.2E-16	18	73	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.21E-14	18	75	IPR009057	Homeodomain-like
Pfam	PF00046	1.2E-12	19	64	IPR001356	Homeobox domain
PROSITE profile	PS50071	14.171	19	66	IPR001356	Homeobox domain
PRINTS	PR00031	1.5E-5	37	46	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	41	64	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.5E-5	46	62	IPR000047	Helix-turn-helix motif
Pfam	PF02183	8.0E-16	66	107	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MIKVTLCFIF RNFKKIDSEV NLLEKSFEEE NKLEPKRKIE LAKKLGLPQR QVAIWFLNRK 60 ARFKFKKIER DYDILKACYD SLLAKHESVI SENEKLKSKV STLTEMLLPA TNQTQRKFQD 120 KLNSKGDETM TSSTTLLPLA NDDYLTNIDE SLGWWV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:8535134}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g01690

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232548	1e-90	AC232548.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010J09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024014666.1	2e-79	homeobox-leucine zipper protein HAT5-like
Swissprot	Q02283	1e-33	HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBL	A0A1J3EYU0	3e-79	A0A1J3EYU0_NOCCA; Homeobox-leucine zipper protein HAT5
TrEMBL	A0A1J3HX77	4e-79	A0A1J3HX77_NOCCA; Homeobox-leucine zipper protein HAT5
STRING	A0A087GTD2	1e-77	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16382	11	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	6e-36	homeobox 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Arce AL,Chan RL A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype. Plant Physiol., 2017. 175(3): p. 1238-1253 [PMID:28956754]