PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g03140
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 162aa    MW: 19107.4 Da    PI: 9.6812
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g03140genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.97.9e-1271124558
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                +++r+k++NRe+ArrsR RK+ + +eL   v  L +eN++L  +l++  +  +k
  Tp7g03140  71 RKQRKKISNRESARRSRMRKQRQRDELWSQVMWLRNENHQLLRKLNRVLESNEK 124
                689******************************************998777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.9E-966125No hitNo description
SMARTSM003381.1E-1267131IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.59969132IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.1E-1071121No hitNo description
PfamPF001701.3E-971124IPR004827Basic-leucine zipper domain
CDDcd147022.69E-1472120No hitNo description
PROSITE patternPS0003607489IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MQPSTNIFSL HGLAPSYLSH FSTTSPFRVN GQNLNPFYSF PTGVNTPQFM SSNNSTSDEA  60
EENQRDVMNE RKQRKKISNR ESARRSRMRK QRQRDELWSQ VMWLRNENHQ LLRKLNRVLE  120
SNEKVIEENA QLKEEASELK QMISDMQLQN QNLFSCLRDD IV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18390RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00533DAPTransfer from AT5G38800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g03140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405699.24e-94LOW QUALITY PROTEIN: basic leucine zipper 43
SwissprotQ9FMC21e-89BZP43_ARATH; Basic leucine zipper 43
TrEMBLV4LX902e-93V4LX90_EUTSA; Uncharacterized protein
STRINGXP_006405699.13e-94(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38800.11e-79basic leucine-zipper 43
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]