PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g03940

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

NF-YC

Protein Properties

Length: 222aa MW: 25318 Da PI: 8.3548

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g03940	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	137.2	4.5e-43	56	156	2	98
NF-YC 2 lksfwekqiekatdfk....nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 +k+fw +q+++ ++f +++lPl+r+kkilk+d++v+mis+++P l+s+ace+fileltlr+w+h+++++r+t++++d+++av+++ ++ fl+d vp Tp7g03940 56 MKVFWDYQRDQLQNFTgfnrQNHLPLSRVKKILKSDPQVRMISSDIPPLFSQACEYFILELTLRAWMHTQSCSRQTIRRCDVFQAVKNSGTYGFLIDLVP 155 89****999999855545789**************************************************************************9 PP NF-YC 98 r 98 Tp7g03940 156 F 156 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.72E-24	60	177	IPR009072	Histone-fold
Pfam	PF00808	1.2E-14	78	141	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.0E-26	79	155	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MKRPIVANSS LFPNASAKAA RIRMEPVAPH SHNMMPMPYH PATSNIEAVS SLEAAMKVFW 60 DYQRDQLQNF TGFNRQNHLP LSRVKKILKS DPQVRMISSD IPPLFSQACE YFILELTLRA 120 WMHTQSCSRQ TIRRCDVFQA VKNSGTYGFL IDLVPFGPHC AIHQKVLPPA KMIMPDMNVP 180 FDMNQIEQEN LRAERLINHK GFDLNSISSE HDSDESHSAR DA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-25	63	155	3	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g03940

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006405799.2	1e-123	nuclear transcription factor Y subunit C-10 isoform X2
Swissprot	Q58CM8	3e-96	NFYCA_ARATH; Nuclear transcription factor Y subunit C-10
TrEMBL	V4LXI0	1e-116	V4LXI0_EUTSA; Uncharacterized protein
STRING	XP_006405799.1	1e-117	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16422	11	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38140.1	1e-98	nuclear factor Y, subunit C12

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]