PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g04190

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

MYB_related

Protein Properties

Length: 352aa MW: 39749.2 Da PI: 4.6266

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g04190	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.1	6.2e-16	189	231	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W++eEd++lv +k G++ W++Ia++++ gR+++ +k+rw+ Tp7g04190 189 KVAWSEEEDQILVATHKVCGNK-WTKIAQKLP-GRSENAIKNRWN 231 568*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.177	184	238	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-18	184	236	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.66E-15	187	240	IPR009057	Homeodomain-like
SMART	SM00717	8.0E-15	188	236	IPR001005	SANT/Myb domain
Pfam	PF00249	3.7E-14	189	231	IPR001005	SANT/Myb domain
CDD	cd00167	2.28E-12	191	234	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MDFSLNISKE GQSSVSGWSP PLNMIGISDH NHQILIPSMS NQNYNPLNQS LVPTQNLPIY 60 NSPTGEIPSK YPFMDMESYS NINSFGESIN DINNNNKNYM TYNTPLSADP KGMFDHFDNF 120 RGNTKWDDTV YKGPNTSCYE PIFDNFVVEP HPFDLPVLEG ITSATTKINR ICDREMNKKV 180 ERRREPLKKV AWSEEEDQIL VATHKVCGNK WTKIAQKLPG RSENAIKNRW NATKRRMLLM 240 KSKQQDEIAN PPHNDILKNY ISQVTIKNDP PTANETAGTT TNIKDDNENE DVLNGEMNLN 300 VDVTTATPGP SATTSTISSS VLEPTATSLW DDYFTEFFES MDDSQMLIQG SD

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MDFSLNISKE GQSSVSGWSP PLNMIGISDH NHQILIPSMS NQNYNPLNQS LVPTQNLPIY  60
NSPTGEIPSK YPFMDMESYS NINSFGESIN DINNNNKNYM TYNTPLSADP KGMFDHFDNF  120
RGNTKWDDTV YKGPNTSCYE PIFDNFVVEP HPFDLPVLEG ITSATTKINR ICDREMNKKV  180
ERRREPLKKV AWSEEEDQIL VATHKVCGNK WTKIAQKLPG RSENAIKNRW NATKRRMLLM  240
KSKQQDEIAN PPHNDILKNY ISQVTIKNDP PTANETAGTT TNIKDDNENE DVLNGEMNLN  300
VDVTTATPGP SATTSTISSS VLEPTATSLW DDYFTEFFES MDDSQMLIQG SD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-14	187	236	54	103	MYB PROTO-ONCOGENE PROTEIN
1idy_A	1e-14	187	236	3	52	MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A	1e-14	187	236	3	52	MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1mse_C	2e-14	187	236	54	103	C-Myb DNA-Binding Domain
1msf_C	2e-14	187	236	54	103	C-Myb DNA-Binding Domain

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g04190

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13303	14	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40360.1	1e-44	myb domain protein 115