PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g04750
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GeBP
Protein Properties Length: 361aa    MW: 41066.2 Da    PI: 4.6142
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g04750genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573135.41.9e-42153250297
     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk..aksgkepsfskehdqkifelskkiWg 97 
                +fqr+wseeDei+lLqG+id++++tg+sp+dd + fye vkksisf+vsk+q++eK+r+LKkKf+++  k  +k+g++p+f+k+hd+k+felsk +Wg
  Tp7g04750 153 YFQRVWSEEDEIALLQGIIDYNNDTGSSPYDDKNVFYELVKKSISFDVSKTQFMEKLRSLKKKFENNLGKgkKKNGEDPAFTKPHDRKAFELSKFVWG 250
                79*****************************************************************99877899**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.2E-35154250IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSAKRFDPLV DPSNVSSSEE EDEEVVRESS EEEEEDDEEE EEEDEEEDDD DFSSRNPTVK  60
KPETEKKQVS DSESGSDEET GSESETEIKS PVKNPEPSVV KNQDSKKAEP SATKKRSSEA  120
DASIDAKRVK KVSGEDEKKS KSVGGGEEMK KYYFQRVWSE EDEIALLQGI IDYNNDTGSS  180
PYDDKNVFYE LVKKSISFDV SKTQFMEKLR SLKKKFENNL GKGKKKNGED PAFTKPHDRK  240
AFELSKFVWG VNGILALESS AVKSNVKQNK SKKVETVLMQ GQHVESVKKP EFVSIVESVA  300
RFGVDDLTAQ QGWSRLASED KKRFEDQWKE LQLREFRFFS QKSGFIHQVV TKMAEAFKQN  360
P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220226GKGKKKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g04750
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631648.11e-112PREDICTED: mediator-associated protein 1-like
SwissprotC0SUU64e-91STKLA_ARATH; Probable transcription factor At1g11510
TrEMBLA0A1J3CT551e-112A0A1J3CT55_NOCCA; Mediator-associated protein 1 (Fragment)
STRINGBo4g143830.11e-112(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.12e-65DNA-binding storekeeper protein-related transcriptional regulator