PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g04800
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 405aa    MW: 46012.3 Da    PI: 9.1394
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g04800genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.85.4e-151699193
               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
               ffk +     ++++ + +p +f ++h  g +k ++++l+   +++ +W+v++  ++++    ltkGW++F+ a++L++gD+++F+++g+  f  +
  Tp7g04800 16 FFKPM--LPGFNTH-ILIPLSFDSKHleGRVKGNEVELRSDASENITWKVQM--DGHR----LTKGWENFAVAHNLRVGDILIFRHEGNLVF--H 99
               67777..6677777.899********98777666666666667779******..8777....***********************7765443..3 PP
2B3474.5e-15150233489
                E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
         B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                v +++++l+++ + lp+ f+++ g++k ++ ++tl d++grs +++l+y+k+s+r+ l++GW+ F+  n+ ++g  + + ++g ++
  Tp7g04800 150 VHVTASNLRLDTVHLPRGFTTSSGLSKLCN-EITLIDKKGRSSTLELRYDKSSNRFRLRRGWRAFCCTNEHETGCLLRLVFVG-TG 233
                678999*******************99775.**************************************99999776666555.44 PP
3B361.61.3e-19294379490
                E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
         B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                v ++  +lk++rl lp +  +++ ++++   +++l++++gr+W++ l+yrk+sg +++t GW++F++ ng k+g +++Fkl++++++
  Tp7g04800 294 VSVTVTNLKEDRLFLPVRVSKSNILNERF-HEISLMNKQGRTWTLSLKYRKSSGNFYITHGWRSFCEVNGQKAGGSFLFKLVRNRTA 379
                56788899***************888766.5**************************************************986544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-207108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.30813106IPR003340B3 DNA binding domain
SuperFamilySSF1019361.67E-1913112IPR015300DNA-binding pseudobarrel domain
CDDcd100178.16E-1515103No hitNo description
SMARTSM010195.0E-2016106IPR003340B3 DNA binding domain
PfamPF023622.8E-101799IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.9E-14140237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-13147238IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-15147244IPR003340B3 DNA binding domain
PROSITE profilePS5086310.052147243IPR003340B3 DNA binding domain
CDDcd100171.35E-13148240No hitNo description
PfamPF023627.0E-13149239IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-20284384IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-18288383IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.776291387IPR003340B3 DNA binding domain
CDDcd100172.48E-15291383No hitNo description
SMARTSM010191.3E-23292388IPR003340B3 DNA binding domain
PfamPF023624.1E-18293380IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MANTISSSSS SVNVHFFKPM LPGFNTHILI PLSFDSKHLE GRVKGNEVEL RSDASENITW  60
KVQMDGHRLT KGWENFAVAH NLRVGDILIF RHEGNLVFHV TPFGPSCCEI VYSEEDECNN  120
AKNKTGKLKV NKKNPKKECS SSDSDTNFVV HVTASNLRLD TVHLPRGFTT SSGLSKLCNE  180
ITLIDKKGRS STLELRYDKS SNRFRLRRGW RAFCCTNEHE TGCLLRLVFV GTGTKPILRI  240
SPLEEDIVRK CNDKQTCFYL GEHSKKNAEV EVYESAEEKK NVESMSDNST SFVVSVTVTN  300
LKEDRLFLPV RVSKSNILNE RFHEISLMNK QGRTWTLSLK YRKSSGNFYI THGWRSFCEV  360
NGQKAGGSFL FKLVRNRTAP VLLMASEDST TEQLREKKHS QVEEM
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g04800
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405883.20.0B3 domain-containing protein REM-like 3
SwissprotF4KFT61e-125REML3_ARATH; B3 domain-containing protein REM-like 3
TrEMBLV4NLN80.0V4NLN8_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006405883.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17423910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G32460.11e-114B3 family protein