PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g05050
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GeBP
Protein Properties Length: 316aa    MW: 35857.4 Da    PI: 5.413
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g05050genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57394.98e-30119213298
     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                +fqrlwseeD++v+L+G+++fk+ tgk + +d+++fye v++s+ f+ ++ s l++Kir LK+K+ +k+k+   g  p ++k+ d+k+fels  +Wgs
  Tp7g05050 119 YFQRLWSEEDDLVILKGMLKFKNVTGKTYNEDMHGFYESVQNSLTFEGKNlSRLTNKIRTLKQKYMTKKKN---GVTPLVTKTYDHKCFELSDLVWGS 213
                79********************************************9765489*************99999...**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.3E-23120212IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MHVTKKHDQP LQDPQTASLS EEETSGSSSE EEDGEEAEEE GEEAEEEGEE AEEAKSPVQT  60
LSESTAADST AADSSSLKKT KKRPRNEKEA ATSVSTAKKA KRNDEKEIIG TETTTKKSYF  120
QRLWSEEDDL VILKGMLKFK NVTGKTYNED MHGFYESVQN SLTFEGKNLS RLTNKIRTLK  180
QKYMTKKKNG VTPLVTKTYD HKCFELSDLV WGSEVKSKMK KIKLESPEPE GGMVDETDWF  240
MNSFLRGHIV SFGIDEEHVK QKWSLLPMEM KTKLRNKWKM LEGKTIGVVV QKIEFVQKVA  300
PMFVYASKDE TSLVLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17683LKKTKKRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g05050
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.19e-40DNA-binding storekeeper protein-related transcriptional regulator