PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g05550
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GeBP
Protein Properties Length: 411aa    MW: 45620.6 Da    PI: 10.2756
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g05550genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57376.15.9e-24272349287
     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 
                lfqrlwse+Dei+lLq ++df    g++p +d  +f e vk+ isf++++sqlveKir+LK+Kfk++++k    + ++f ++hd+ 
  Tp7g05550 272 LFQRLWSEDDEIILLQTILDF----GMDPLEDRIGFQESVKSFISFEFTTSQLVEKIRSLKRKFKRNESK----EVVTFYRPHDHT 349
                69*******************....*******************************************99....888999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-17273348IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MYTTKQKEKY EKSYQNPHGQ KPNQANGTTT KLSGSSGDIG GTCKQASGSD TETGKITSVV  60
KSKKNKKRSK KKAHTFASVA LPKKKRNTME EPPSEEEEQV SVEEEESGGE HKELVKTPAE  120
IVAFSVAGKQ ASGSDNETEK IASVAKTKQN KKRSKKESHT SAAVAVSKKK SKTMEQPSSE  180
EEKQVSPEEG EQKELVKPGS SSLAVSAAGK QDSGSDSAVM SKKRSEMEDA KPSVAAAAVA  240
SLKRKMNLPN EGGSSRNVKA KHNNTKEKNP FLFQRLWSED DEIILLQTIL DFGMDPLEDR  300
IGFQESVKSF ISFEFTTSQL VEKIRSLKRK FKRNESKEVV TFYRPHDHTW KVASFGLGEK  360
TVKKGWSLVP KERKKKIEQK LKLFEKEANK FVMVKIQIVH DVVSAIAEYT S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16270KKNKKRSKK
26985KKKAHTFASVALPKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g05550
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.11e-18DNA-binding storekeeper protein-related transcriptional regulator