PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g05650

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Protein Properties

Length: 243aa MW: 27755.7 Da PI: 9.5618

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g05650	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.2	3.7e-24	21	117	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f+++++++++l+s++++l+++fa+e+g+kk++ ++tl d++g +W +l +++g +++tkGW +F+ angLk g+++++++++ +++++++k+++k Tp7g05650 21 FLTKTLKPYMLSSRQIRLSRTFARENGIKKAG--EITLVDKHGVKWPSYLASVNHQGDFYMTKGWISFCAANGLKIGETFTLEFVRGEDTTPMLKFCSK 117 7788889******************99887..7***********999****************************99********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.8E-21	16	117	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.96E-22	17	117	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.57E-18	20	116	No hit	No description
Pfam	PF02362	1.2E-23	21	117	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.902	21	117	IPR003340	B3 DNA binding domain
SMART	SM01019	6.7E-30	21	118	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MADPPPFLVT SSSEGMSQNK FLTKTLKPYM LSSRQIRLSR TFARENGIKK AGEITLVDKH 60 GVKWPSYLAS VNHQGDFYMT KGWISFCAAN GLKIGETFTL EFVRGEDTTP MLKFCSKVKI 120 EQSPFNGSRG TVQASWEEEE TEIRVQKRAR VYEEGETSRH AEASNKSRVD SRNLQQKQTL 180 KPCSISDQVR KVKLNIVEAL NGVRGFRLEL EIKEKNLEAL LHEFDASVER VLEMEKILKY 240 HHV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g05650

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024014544.1	1e-89	LOW QUALITY PROTEIN: B3 domain-containing protein REM2
Swissprot	Q8VZQ9	3e-76	REM3_ARATH; B3 domain-containing protein REM3
TrEMBL	A0A1P8B628	2e-74	A0A1P8B628_ARATH; Transcriptional factor B3 family protein
STRING	Bostr.5022s0131.1.p	5e-78	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28126	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31620.1	1e-78	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]