PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g05720

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GeBP

Protein Properties

Length: 458aa MW: 51749.9 Da PI: 4.3533

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g05720	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	109.2	2.9e-34	54	149	3	98
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 ++r+w+e+De+++L+Gl+d++ kt +p d+d+f++fv++si++k+sk+ql++Kir+L++Kf +++++++gk+p f++ +d+++f++s++iWg+ Tp7g05720 54 IKRIWNEDDELSILKGLVDYRVKTRFEPNFDWDGFFDFVQGSIHVKFSKEQLFSKIRKLRRKFIVHMERINQGKDPLFTRCSDSQVFGYSSMIWGQ 149 68********************************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	7.8E-27	55	148	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MATPKRLNFS SGDGGGDSIT SLQKPPSTNA EEEEEEVPIK KTKKKKKKLA SPVIKRIWNE 60 DDELSILKGL VDYRVKTRFE PNFDWDGFFD FVQGSIHVKF SKEQLFSKIR KLRRKFIVHM 120 ERINQGKDPL FTRCSDSQVF GYSSMIWGQN DDQVSAKESM EKPQEETQSR DDEQMDYAEP 180 VNDNGSEKSM FDDKTIENRT AGEKAEFANG EGMEKAKQTE SAENEQMDNA EPVNDNGYEK 240 SMLNDKTIEN RTAREEAEFA NRGGMEKAMQ TEGAEDEQME DAEPVNDNGS EKSIFDDKTI 300 EYMTAGEEAE FANGGGMERA MQIDSAEDAF KENEQVGNDE PVNENGGTEG KFDGISLHEV 360 GVDKTTEYKT DGKESHEDDD DDDGVDELLN VQDAFEATIS QGLSGCQKRL QLKKLMNLGK 420 IKRKELSNEW KALRSEEVKL NIKKLRFSAK LVEAANDE

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MATPKRLNFS SGDGGGDSIT SLQKPPSTNA EEEEEEVPIK KTKKKKKKLA SPVIKRIWNE  60
DDELSILKGL VDYRVKTRFE PNFDWDGFFD FVQGSIHVKF SKEQLFSKIR KLRRKFIVHM  120
ERINQGKDPL FTRCSDSQVF GYSSMIWGQN DDQVSAKESM EKPQEETQSR DDEQMDYAEP  180
VNDNGSEKSM FDDKTIENRT AGEKAEFANG EGMEKAKQTE SAENEQMDNA EPVNDNGYEK  240
SMLNDKTIEN RTAREEAEFA NRGGMEKAMQ TEGAEDEQME DAEPVNDNGS EKSIFDDKTI  300
EYMTAGEEAE FANGGGMERA MQIDSAEDAF KENEQVGNDE PVNENGGTEG KFDGISLHEV  360
GVDKTTEYKT DGKESHEDDD DDDGVDELLN VQDAFEATIS QGLSGCQKRL QLKKLMNLGK  420
IKRKELSNEW KALRSEEVKL NIKKLRFSAK LVEAANDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	39	47	KKTKKKKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g05720

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006405985.1	1e-116	GLABROUS1 enhancer-binding protein isoform X1
TrEMBL	V4M565	1e-115	V4M565_EUTSA; Uncharacterized protein
STRING	XP_006405985.1	1e-115	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6117	17	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25650.1	6e-83	DNA-binding storekeeper protein-related transcriptional regulator