PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g05730

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GeBP

Protein Properties

Length: 450aa MW: 51395.1 Da PI: 5.6968

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g05730	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	95.9	3.9e-30	134	233	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.....aksgkepsfskehdqkifelskkiW 96 +fqrl+seeDe++lLqG++df++++g +p++d+d+f++fvk+ i f+++k+ql++K+r+LK+Kf + vkk + +++++fs++ qk+fe+ kiW Tp7g05730 134 MFQRLFSEEDELALLQGILDFTSTKG-DPFKDTDGFCDFVKHLICFDANKTQLLNKVRKLKQKFGDAVKKsfekrKGGEDKIVFSNDVKQKAFEWWTKIW 232 79**********************.9*********************************999998876333456689*************** PP DUF573 97 g 97 + Tp7g05730 233 E 233 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.1E-24	135	233	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MVCSTEEEVE ESGSFVEESD SFGEEDDQEK QVQTDVVVPL VTKLMRENSV SVPESSTDDV 60 VKTKKMKRRA RSDKHVKKIS RDDDEAKKKR KRTRTEATEE EISGADDDEA KKKMKTPRTD 120 ATSVNGDETK QKTMFQRLFS EEDELALLQG ILDFTSTKGD PFKDTDGFCD FVKHLICFDA 180 NKTQLLNKVR KLKQKFGDAV KKSFEKRKGG EDKIVFSNDV KQKAFEWWTK IWENAGVLAA 240 KSKSKKKKDE SAKLEINVAN VLLSSFGREM VSLSKSEKLT SFGLDESTVL TRLNMVVDGP 300 KKRAMEEKLK SIKARQAELC LTRIKCVAYT VNVIFKEGIA SSPSHSLDAV EEENDIFVEQ 360 LECNETNMHD RKRTDLKECE DIDMDEKETL FPLSQIVKQT SISEEGQDMA YCVTTNVKSL 420 ENRHKTVVFK DLSKLWEKHD PQLPWQKGDY

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MVCSTEEEVE ESGSFVEESD SFGEEDDQEK QVQTDVVVPL VTKLMRENSV SVPESSTDDV  60
VKTKKMKRRA RSDKHVKKIS RDDDEAKKKR KRTRTEATEE EISGADDDEA KKKMKTPRTD  120
ATSVNGDETK QKTMFQRLFS EEDELALLQG ILDFTSTKGD PFKDTDGFCD FVKHLICFDA  180
NKTQLLNKVR KLKQKFGDAV KKSFEKRKGG EDKIVFSNDV KQKAFEWWTK IWENAGVLAA  240
KSKSKKKKDE SAKLEINVAN VLLSSFGREM VSLSKSEKLT SFGLDESTVL TRLNMVVDGP  300
KKRAMEEKLK SIKARQAELC LTRIKCVAYT VNVIFKEGIA SSPSHSLDAV EEENDIFVEQ  360
LECNETNMHD RKRTDLKECE DIDMDEKETL FPLSQIVKQT SISEEGQDMA YCVTTNVKSL  420
ENRHKTVVFK DLSKLWEKHD PQLPWQKGDY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	92	KKRKRT
2	89	114	RKRTRTEATEEEISGADDDEAKKKMK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g05730

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25246	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25210.1	5e-51	DNA-binding storekeeper protein-related transcriptional regulator