PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g09580

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

FAR1

Protein Properties

Length: 204aa MW: 23660.7 Da PI: 6.0646

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g09580	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.5	1.4e-25	35	127	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA+++GF vr+ + ++s +g++ r++ C+k+g++ ++++k +e+r r++ r gCka++ vk+ek+gkw+vt++++eHnH+l+ Tp7g09580 35 DFYVDYARKLGFVVRMMQRRRSGIDGRTLARRLGCNKQGFSPSNHTKspdFGTEKRLRSSAREGCKATILVKMEKSGKWVVTRFVKEHNHSLV 127 6*************************************99999887887889999*******************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-24	35	127	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MTVEPNEGDL KPPESETLEE PYVGMEFESE EEARDFYVDY ARKLGFVVRM MQRRRSGIDG 60 RTLARRLGCN KQGFSPSNHT KSPDFGTEKR LRSSAREGCK ATILVKMEKS GKWVVTRFVK 120 EHNHSLVLNA SPYGGSLADK DKKIEELTEE LEYQNRLCAV YRDKLVSFMN NVEQYTEELS 180 LKVRDIVENI KKLEYEMQSH DDHL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g09580

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010527352.1	1e-100	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	4e-24	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1J3HRI4	1e-112	A0A1J3HRI4_NOCCA; Protein FAR1-RELATED SEQUENCE 5
STRING	XP_010527352.1	2e-99	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	2e-93	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]