PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g11180

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GeBP

Protein Properties

Length: 627aa MW: 70376.8 Da PI: 6.0307

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g11180	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	125.3	2.7e-39	246	338	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 lfqrlwseeDei+lLqG+idfka+tg sp++d+d+fy f +ksisf++sk+q+++Kir+LKkK+ +kvk+ g e sf k+hd ++f+lsk iWgs Tp7g11180 246 LFQRLWSEEDEISLLQGMIDFKADTGDSPYEDMDRFYGFTRKSISFDASKNQFMDKIRSLKKKYMGKVKN---GLE-SFPKAHDMECFKLSKYIWGS 338 69*****************************************************************9...666.9***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.3E-31	247	337	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence Send to blast
MGETYKKDLA RQILDDMANN HLTHYGTTIG HQSQLLVRLW NYTVFLLITF ISKKKHFCLY 60 ILFAGRFSST CPLQTLKAKA FTSNSALTLF LLHYKKNSFM AKKLNPLEDP PTASSSEEDE 120 VEILSEEEEE EVEEQISDDS SSEEEDDLMN PVVVPPVTKP KSSSSAAATI ALPGKYAVAS 180 GSNSSPSKPG SKKPKENVVC GSPAVKSGKK RPSEKTISTE VNAKRSKKVS EDNEMKVVED 240 TKKPLLFQRL WSEEDEISLL QGMIDFKADT GDSPYEDMDR FYGFTRKSIS FDASKNQFMD 300 KIRSLKKKYM GKVKNGLESF PKAHDMECFK LSKYIWGSHE MALKSDVKSN VKKSEKKLDS 360 VKPHGKKVKE IESDGVPVKS AVKSNGTPKK SKEKLDSLKA NGEKVEEDHR EVLVSGKNVE 420 EGKEVLINDE KVEEDREVLV NGEKVDEDKE VLVNGEKLEE DREVLVGEKV EEDKEVLVNG 480 GDWKSLGVMI ASDWFEDSFL VGSIASLGVS EKFVKQKWSM VAVETKKRME EKWKLLQAKE 540 MELVLQKTDF MPNIKNSRSV FNRHWTGDKS TDIDSPMQTL DETSIPTGET STLQENGIPK 600 TSTCRRHVTQ PLVPHFDLLV GQSTTAS

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence Send to blast

MGETYKKDLA RQILDDMANN HLTHYGTTIG HQSQLLVRLW NYTVFLLITF ISKKKHFCLY  60
ILFAGRFSST CPLQTLKAKA FTSNSALTLF LLHYKKNSFM AKKLNPLEDP PTASSSEEDE  120
VEILSEEEEE EVEEQISDDS SSEEEDDLMN PVVVPPVTKP KSSSSAAATI ALPGKYAVAS  180
GSNSSPSKPG SKKPKENVVC GSPAVKSGKK RPSEKTISTE VNAKRSKKVS EDNEMKVVED  240
TKKPLLFQRL WSEEDEISLL QGMIDFKADT GDSPYEDMDR FYGFTRKSIS FDASKNQFMD  300
KIRSLKKKYM GKVKNGLESF PKAHDMECFK LSKYIWGSHE MALKSDVKSN VKKSEKKLDS  360
VKPHGKKVKE IESDGVPVKS AVKSNGTPKK SKEKLDSLKA NGEKVEEDHR EVLVSGKNVE  420
EGKEVLINDE KVEEDREVLV NGEKVDEDKE VLVNGEKLEE DREVLVGEKV EEDKEVLVNG  480
GDWKSLGVMI ASDWFEDSFL VGSIASLGVS EKFVKQKWSM VAVETKKRME EKWKLLQAKE  540
MELVLQKTDF MPNIKNSRSV FNRHWTGDKS TDIDSPMQTL DETSIPTGET STLQENGIPK  600
TSTCRRHVTQ PLVPHFDLLV GQSTTAS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g11180

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024005890.1	1e-133	LOW QUALITY PROTEIN: probable transcription factor At1g44810
Swissprot	Q9SYA9	7e-53	STKLD_ARATH; Probable transcription factor At1g61730
TrEMBL	A0A3P6C980	1e-131	A0A3P6C980_BRAOL; Uncharacterized protein
STRING	Bo4g130950.1	1e-131	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	1e-47	DNA-binding storekeeper protein-related transcriptional regulator