PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g12900

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

CPP

Protein Properties

Length: 683aa MW: 74988.5 Da PI: 5.3961

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g12900	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.6	3.9e-16	384	422	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk Tp7g12900 384 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 422 689**********************************96 PP
2	TCR	52.5	9.6e-17	469	507	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN Tp7g12900 469 RHKRGCNCKKSNCLKKYCECFQGGVGCSINCRCEGCKNA 507 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.3E-19	383	424	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.593	384	509	IPR005172	CRC domain
Pfam	PF03638	6.6E-12	386	421	IPR005172	CRC domain
SMART	SM01114	2.1E-17	469	510	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	4.1E-12	471	507	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence Send to blast
MDTPQKSVTQ IGTPISKSRF EDSPVFNYIN SLSPIRPVKS IQNPHQFSSL NFTSPPSVFT 60 SPHLTSSHKE SRFFKTHNSS TSDPTNPVEE SRDESTSTEE VAAEAEATKD FNIDASMGNE 120 ASIATELPQI IKYDSCGITH DDPVPASPCG RDTTDLSLVP YAPPQGENGS SEDAATMELQ 180 KMYDNVQGKT ETPDWESLIS DASELLIFGS PNDSEAFRCL MMQRASTSEA RMGMPTMQPD 240 SNNEPESSSA IPYEAVSVLH RGIRRRCLDF EMPGNKQASS ENNTAACESS SRCIVPSIGL 300 HLNAILMSSK DCKTNVTHDY SCSENNQVGL RGSSFTLQET LDQTENETRE DADQNVPVEP 360 TLEELHLNSP KKKRLKLEAG EGESCKRCNC KKSKCLKLYC ECFAAGVYCI EPCSCIDCFN 420 KPIHEDTVLA TRKQIESRNP LAFAPKVIRS SDSVLETGDD ASKTPASARH KRGCNCKKSN 480 CLKKYCECFQ GGVGCSINCR CEGCKNAFGR KDGSSTVDME AEQEEENETS EKNRKAKTQE 540 NTEVFLMRKE ESSALPRTPM SIYRQQPFSS SKNMMPPPQS LLGGGSSSGM FNSQYLRKRE 600 MSSTQSRTEK SFETGAEDGA EEMPEILSHP PIDNIKAVSP NGKRVSPPHL DSSSSGSSLG 660 RRSGGRKLIL QSIPLFPSLT PQR

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence Send to blast

MDTPQKSVTQ IGTPISKSRF EDSPVFNYIN SLSPIRPVKS IQNPHQFSSL NFTSPPSVFT  60
SPHLTSSHKE SRFFKTHNSS TSDPTNPVEE SRDESTSTEE VAAEAEATKD FNIDASMGNE  120
ASIATELPQI IKYDSCGITH DDPVPASPCG RDTTDLSLVP YAPPQGENGS SEDAATMELQ  180
KMYDNVQGKT ETPDWESLIS DASELLIFGS PNDSEAFRCL MMQRASTSEA RMGMPTMQPD  240
SNNEPESSSA IPYEAVSVLH RGIRRRCLDF EMPGNKQASS ENNTAACESS SRCIVPSIGL  300
HLNAILMSSK DCKTNVTHDY SCSENNQVGL RGSSFTLQET LDQTENETRE DADQNVPVEP  360
TLEELHLNSP KKKRLKLEAG EGESCKRCNC KKSKCLKLYC ECFAAGVYCI EPCSCIDCFN  420
KPIHEDTVLA TRKQIESRNP LAFAPKVIRS SDSVLETGDD ASKTPASARH KRGCNCKKSN  480
CLKKYCECFQ GGVGCSINCR CEGCKNAFGR KDGSSTVDME AEQEEENETS EKNRKAKTQE  540
NTEVFLMRKE ESSALPRTPM SIYRQQPFSS SKNMMPPPQS LLGGGSSSGM FNSQYLRKRE  600
MSSTQSRTEK SFETGAEDGA EEMPEILSHP PIDNIKAVSP NGKRVSPPHL DSSSSGSSLG  660
RRSGGRKLIL QSIPLFPSLT PQR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-16	388	506	14	120	Protein lin-54 homolog
5fd3_B	2e-16	388	506	14	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	369	376	PKKKRLKL

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00433	DAP	Transfer from AT4G14770	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g12900

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161539	1e-102	AL161539.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39.
GenBank	CP002687	1e-102	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBank	Z97337	1e-102	Z97337.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872377.1	0.0	protein tesmin/TSO1-like CXC 2 isoform X1
Swissprot	F4JIF5	0.0	TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBL	R0F1B1	0.0	R0F1B1_9BRAS; Uncharacterized protein
STRING	XP_006282514.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	0.0	TESMIN/TSO1-like CXC 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]