PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g19090
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Dof
Protein Properties Length: 226aa    MW: 25540.2 Da    PI: 8.2186
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g19090genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof114.83.6e-362177561
     zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                + cprC+s+ntkfCyynnys+sqPryfCk+CrryWt+GG lrnvP+Gg+ r+ k++
  Tp7g19090 21 PRVCPRCNSDNTKFCYYNNYSVSQPRYFCKTCRRYWTHGGELRNVPIGGSGRRPKRT 77
               678************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-241676IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.0712276IPR003851Zinc finger, Dof-type
PfamPF027011.1E-312276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDYSSVSMRG DNQWNQEKPP PRVCPRCNSD NTKFCYYNNY SVSQPRYFCK TCRRYWTHGG  60
ELRNVPIGGS GRRPKRTRTD QVSVEIPQVI HHQPFLHAQE TNEFVGSFGG SSSSAAVGIG  120
SHFVSLPEIY GDMVTNVSPI RSFPSMDALG MSDAYRQDYY DVGSNHLIGN PLINQPIGGS  180
VVVSSDHNRY FVNQEDQNKW NDQNFNNTMN MNHNATSTSG SRIFKH
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g19090
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134257.14e-95PREDICTED: dof zinc finger protein DOF4.4-like
SwissprotQ9SUA94e-69DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A398AKN69e-94A0A398AKN6_BRACM; Uncharacterized protein
TrEMBLM4DAI49e-94M4DAI4_BRARP; Uncharacterized protein
STRINGBra013494.1-P2e-94(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.14e-64Dof-type zinc finger domain-containing protein