PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g19120
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Dof
Protein Properties Length: 249aa    MW: 27624.2 Da    PI: 7.9215
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g19120genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof103.61.1e-322177561
     zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                + cprC+s+ntkfCyynn ++sqPry Ck+Crr+Wt+GGalrnvP+Gg+ rk k++
  Tp7g19120 21 PRVCPRCNSNNTKFCYYNNRTVSQPRYNCKNCRRFWTHGGALRNVPIGGSGRKPKRT 77
               678**************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-231576IPR003851Zinc finger, Dof-type
PfamPF027016.2E-292276IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.592276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MENMSVLVKG DNHVLKEKPP PRVCPRCNSN NTKFCYYNNR TVSQPRYNCK NCRRFWTHGG  60
ALRNVPIGGS GRKPKRTRTD QVSVEIQQVN HHQPFLHVQE TNEFFGSFGG SSSSSVIAVG  120
NHFGSVPESH GDMVLPNQSF PPMDRSDLHD GSFQQDHYDV GSNGLIGNPL INQSIGGSSF  180
VSSDQNGYRN QDDGNNWNQS FNNNMNMNHN ASTSGSRGSL GTDHMEKNNG EIRNNCVLSS  240
SYHLETHGP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g19120
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013647345.11e-118dof zinc finger protein DOF4.4-like
SwissprotQ9SUA97e-72DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A3P5ZK041e-116A0A3P5ZK04_BRACM; Uncharacterized protein
STRINGBra013493.1-P1e-116(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.19e-69Dof-type zinc finger domain-containing protein