PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g19680
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 402aa    MW: 44845.7 Da    PI: 8.3077
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g19680genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51e-17297598
               -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
               l+ sd+++ grlvlpkk+ae++   ++++e++ l+++d+ g++W+++++y  +++s++yvl+ G     ++ +L++gD+v+F++++  e++l +++++
  Tp7g19680  2 LSASDTGRVGRLVLPKKCAEAFlpRISHTEGVPLKVQDPMGKEWTFQFRYwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVLFSRVD-PERKLIMGFRK 97
               5789999*****************88889999******************89999999***9.********************776.66666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.955199IPR003340B3 DNA binding domain
SMARTSM010196.0E-16199IPR003340B3 DNA binding domain
SuperFamilySSF1019363.66E-18297IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-25299IPR015300DNA-binding pseudobarrel domain
CDDcd100172.95E-21297No hitNo description
PfamPF023626.5E-15297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MLSASDTGRV GRLVLPKKCA EAFLPRISHT EGVPLKVQDP MGKEWTFQFR YWPNNNSRMY  60
VLEGVTPCIQ SMQLQAGDTV LFSRVDPERK LIMGFRKASV GQSSDQGTCS TNNNRGSCTN  120
GYAEAIDRQT PGVEFSSAKN KSSMMITRSK RQKVEKGDHI ELKLTWEEAQ GFILPPPNLT  180
PSIIEIEGFE FEEYEDAPII GKPMTGSTCS ANKRLLAEQD DEKAMEETEG LLMSPKATTK  240
HPRHRSGCTC IVCIQSPSGT GPKHGRRCSC TVCDTVKRRR LSLLLRRKKK QIEKENKAHK  300
ELESMNSEEE LHQSAKNSGS TSKNHEHHAL PLKAQIDLNF QPERDEESLP RSNTTSKNKS  360
LHHDDTSSKP PSSSSAHSQI DKQDQGKLEI CIEIADSPIA AR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fas_A2e-53210113112B3 domain-containing transcription repressor VAL1
6fas_B2e-53210113112B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276280KRRRL
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant development. {ECO:0000269|PubMed:17158584}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g19680
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0322987e-60KF032298.1 Leavenworthia alabamica pop-variant Russellville self-incompatibility gene locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005764.10.0LOW QUALITY PROTEIN: B3 domain-containing transcription factor VAL3
SwissprotO654201e-148VAL3_ARATH; B3 domain-containing transcription factor VAL3
TrEMBLV4P6M60.0V4P6M6_EUTSA; Uncharacterized protein
STRINGXP_006413764.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.11e-147VP1/ABI3-like 3