PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g20710
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family LBD
Protein Properties Length: 215aa    MW: 23460.8 Da    PI: 4.9356
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g20710genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260104.21.1e-3251081100
     DUF260   1 aCaaCkvlrrkCa....kdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                +CaaCkvl+ +C+    ++C++ap fp+++p+kf  vh++FGa+nv k+l+++++ ere+a+ssl+yeAear++dP++G vg+ + l++ l++lk+++++
  Tp7g20710   5 PCAACKVLNSSCTmvppQECIFAPFFPSTEPEKFDRVHRVFGAENVYKILANVKPWERETAVSSLCYEAEARIQDPISGYVGMQSILENFLNSLKEKIDS 104
                7***********6444479*******************************************************************************99 PP

     DUF260  97 lkee 100
                +k+e
  Tp7g20710 105 TKKE 108
                9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.924109IPR004883Lateral organ boundaries, LOB
PfamPF031957.8E-315106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MALRPCAACK VLNSSCTMVP PQECIFAPFF PSTEPEKFDR VHRVFGAENV YKILANVKPW  60
ERETAVSSLC YEAEARIQDP ISGYVGMQSI LENFLNSLKE KIDSTKKELA AIVGPEKVPQ  120
FSEFLMSGDV LNTPASLFAF IDGMEELTEA HKYVLKQLPF STAKGIVRNI VTNREDEEMV  180
DVPGAAGAST SAGPSVAAGS TGNTQRMPPQ NQNKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-31510911111LOB family transfactor Ramosa2.1
5ly0_B6e-31510911111LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g20710
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.14e-49LOB domain-containing protein 35