PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g21700
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 347aa    MW: 38295.8 Da    PI: 5.7499
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g21700genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-18122172155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                ++++GVr+++ +g+W+AeIrdp     r  r +lg++ taeeAa  ++ a+ +l+g
  Tp7g21700 122 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYNTAEEAALVYDSAAIQLRG 172
                59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.2E-12123172IPR001471AP2/ERF domain
PROSITE profilePS5103223.459123180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-29123180IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-21123181IPR016177DNA-binding domain
SMARTSM003801.0E-36123186IPR001471AP2/ERF domain
PRINTSPR003679.3E-10124135IPR001471AP2/ERF domain
CDDcd000188.96E-31124179No hitNo description
PRINTSPR003679.3E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
METEKKLVLP KIKFTEHKTN TTRIVPGFNN HHDRQPRILR ISVTDPDATD SSSDDEEEDH  60
QRFVSKRRRI KKFINEVVLD SGATGCSSQG ESKKRRKRPA TVKSKSASAP AIAAAAATTT  120
EKKFRGVRQR PWGKWAAEIR DPLRRVRLWL GTYNTAEEAA LVYDSAAIQL RGPDALTNFS  180
VPPSSTEKKS PPLSPVKYTK KKIKDDVASS SISSNSIDCL CSPVSVLRSP FAVDENSGST  240
TSTAAVIVKE EPFIVKEEPS TTAMTTASET FSDFSASLLT DEDLFDFRSS VVPDYLGGDL  300
FGEDIFADTC TDMNFGFDFE TGLSNWHVED HFQDIGDLFG SDPLLAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20122187470ATERF1
3gcc_A3e-20122187470ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16569KRRRI
29296KKRRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g21700
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1978465e-76EF197846.1 Arabidopsis halleri miR319a microRNA locus, genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413521.11e-172ethylene-responsive transcription factor CRF2
SwissprotQ9SUQ21e-159CRF2_ARATH; Ethylene-responsive transcription factor CRF2
TrEMBLV4MET21e-170V4MET2_EUTSA; Uncharacterized protein
STRINGXP_006413521.11e-171(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-148cytokinin response factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ckurshumova W,Berleth T
    Overcoming recalcitrance - Auxin response factor functions in plant regeneration.
    Plant Signal Behav, 2015. 10(7): p. e993293
    [PMID:26098229]
  4. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  5. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]