PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g22030
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Dof
Protein Properties Length: 349aa    MW: 37780.4 Da    PI: 7.8356
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g22030genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.41.8e-3948108262
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                k++a++cprC+stntkfCyynnysl+qPr+fCk+CrryWt+GG+lrn+PvGgg+rknk+s+
  Tp7g22030  48 KDQAINCPRCNSTNTKFCYYNNYSLTQPRFFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 108
                7899******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2741100IPR003851Zinc finger, Dof-type
PfamPF027014.6E-3349106IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.53752106IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105490IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDTAQWPQEI VVKPLEEIVT NTCTKPQPQQ PPPVGAAGGA ERKARPEKDQ AINCPRCNST  60
NTKFCYYNNY SLTQPRFFCK GCRRYWTEGG SLRNIPVGGG SRKNKRSHSS SSDISNTRSE  120
STQPATKKHL SDHHHHHLMT MSQQGLTGQN PKFLETTQQD LNLGFPPHGL IRTNFTDLIH  180
NIGNSNSNTN KSNNHNNPLL GSSCSATSAI ATSPLDLIRN SNSNNGNTSN SSFMGFPVHN  240
QDPSSGGFSM QDHYKPCSTN TTLLGFSLDH HHNNGFHGGF QGGEEGGEGG DDVNGRHLFP  300
FEDLKLPVSS SSAAINVDIN DHQKRASGGD AAATSGGYWT GMLSGGSWC
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g22030
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3171530.0AK317153.1 Arabidopsis thaliana AT4G24060 mRNA, complete cds, clone: RAFL21-94-L04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137416.10.0PREDICTED: dof zinc finger protein DOF4.6-like
RefseqXP_022570837.10.0dof zinc finger protein DOF4.6-like
SwissprotQ8LAP80.0DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLA0A397L7650.0A0A397L765_BRACM; Uncharacterized protein
TrEMBLM4DRV40.0M4DRV4_BRARP; Uncharacterized protein
STRINGBra019247.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34332761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.11e-126Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]