PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g22110

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GRF

Protein Properties

Length: 426aa MW: 46754.6 Da PI: 7.2417

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g22110	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.8	9.5e-24	181	225	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rC+RtDGKkWRCsr+v++ +k+CErH h++r rsrk++e+ Tp7g22110 181 DMEPWRCKRTDGKKWRCSRNVIPEQKYCERHTHKSRPRSRKHVES 225 79****************************************997 PP
2	QLQ	52.7	1.3e-18	112	146	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 aF+ aQ+q+L++Q +yKy++a++PvP+eLl + + Tp7g22110 112 AFSEAQWQELERQRNIYKYMMASVPVPSELLTPFS 146 8******************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.7E-11	111	147	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	18.688	112	147	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	7.7E-12	112	144	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.573	181	225	IPR014977	WRC domain
Pfam	PF08879	4.9E-19	182	224	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0009941	Cellular Component	chloroplast envelope
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MGTRAERNKE DFVGGFGYGV VEHSHKDVMV PSHHHHYPSY SSPSSSSLCY CSAGVGDPMF 60 SASSNQAYTS SLGEMFSLAG SNSAAVSVAD PFFTLSSSGE MGRSMSEKEG AAFSEAQWQE 120 LERQRNIYKY MMASVPVPSE LLTPFSKNPS NTNNQDVTVA VAKGGSLKLG IASNASNNAA 180 DMEPWRCKRT DGKKWRCSRN VIPEQKYCER HTHKSRPRSR KHVESSNHND TRTSKNDTSQ 240 YARTYPQIYG QPVSQLAAIS TLPSASSSND HHREIRWFMK EGDSIATLGP VIHEAVQLKV 300 GSNRELKRRF DYDLNYRQKE PLVDQSFGAL EGLLSPNQTP HNQETRRFFV EGDPDEAMGS 360 SLTLSMAGGA MEEAERTNQH QWVSHEGPSW LCSTTPGGPL AEALCLGVSN NPSTSTTTSS 420 CSRSSS

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MGTRAERNKE DFVGGFGYGV VEHSHKDVMV PSHHHHYPSY SSPSSSSLCY CSAGVGDPMF  60
SASSNQAYTS SLGEMFSLAG SNSAAVSVAD PFFTLSSSGE MGRSMSEKEG AAFSEAQWQE  120
LERQRNIYKY MMASVPVPSE LLTPFSKNPS NTNNQDVTVA VAKGGSLKLG IASNASNNAA  180
DMEPWRCKRT DGKKWRCSRN VIPEQKYCER HTHKSRPRSR KHVESSNHND TRTSKNDTSQ  240
YARTYPQIYG QPVSQLAAIS TLPSASSSND HHREIRWFMK EGDSIATLGP VIHEAVQLKV  300
GSNRELKRRF DYDLNYRQKE PLVDQSFGAL EGLLSPNQTP HNQETRRFFV EGDPDEAMGS  360
SLTLSMAGGA MEEAERTNQH QWVSHEGPSW LCSTTPGGPL AEALCLGVSN NPSTSTTTSS  420
CSRSSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g22110

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL109619	1e-143	AL109619.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial sequence (ESSA project).
GenBank	AL161561	1e-143	AL161561.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61.
GenBank	ATAC002343	1e-143	AC002343.1 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence, complete sequence.
GenBank	CP002687	1e-143	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006413469.2	0.0	growth-regulating factor 8 isoform X1
Swissprot	Q9SU44	0.0	GRF8_ARATH; Growth-regulating factor 8
TrEMBL	V4MHX2	0.0	V4MHX2_EUTSA; Uncharacterized protein
STRING	XP_006413469.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7836	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	0.0	growth-regulating factor 8

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]