PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g23420
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 166aa    MW: 19010.1 Da    PI: 8.3183
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g23420genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.18.5e-15354255
               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               + +h e+E++RR+++ s ++ Lr+llP  +   ++K s ++ L +Av+YIk+ q
  Tp7g23420  3 KIMHREVEKQRRQEMASLYASLRSLLPLEF--IQGKRSTSDQLNEAVNYIKYVQ 54
               568*************************65..********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.554153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.53E-10358No hitNo description
SuperFamilySSF474593.01E-13368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-12454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-12567IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-6759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MEKIMHREVE KQRRQEMASL YASLRSLLPL EFIQGKRSTS DQLNEAVNYI KYVQRNIKDM  60
NSKRDDLMLL SGRSCGSKSE QGRNENPNHF VIRPSLVGVE IVFSILQTPL SSVLQVLCEH  120
GLCVLSCISF NVNDRLIYTL QAEVNDKAII DFAYLKDTLI TLTLMK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g23420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480741.13e-88PREDICTED: transcription factor bHLH118-like
SwissprotQ9STJ77e-82BH118_ARATH; Transcription factor bHLH118
TrEMBLA0A1J3IUJ12e-85A0A1J3IUJ1_NOCCA; Uncharacterized protein
STRINGBo7g110280.13e-83(Brassica oleracea)
STRINGXP_010448440.15e-84(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.13e-84bHLH family protein