PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g23430
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 220aa    MW: 24522.8 Da    PI: 9.5895
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g23430genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-094493253
               HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
               +  h  +Er+RR+++   f+ Lr++lP       ++K   ++ +  Av++Ik+
  Tp7g23430 44 KLLHRDIERQRRQEMAALFASLRTHLPLqY---IKGKRAVSDHVNGAVNFIKD 93
               6679************************66...9999999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.29E-1139112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.50E-84093No hitNo description
PROSITE profilePS5088811.424294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-744112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-74493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDPYQNPNPK AYQRQRPFGS AGDGGSSGGS DMPHETAENK KKKKLLHRDI ERQRRQEMAA  60
LFASLRTHLP LQYIKGKRAV SDHVNGAVNF IKDTETRIKE LSARKDELSR ETCRRYQTNP  120
DPARTAPEFS KSDPASVMVQ PCVSGFEVAV SSNSSGPEAL PLSRVLEALQ EKGLEVISSL  180
TTRVNERLMH TIKVEVLLQH AMSIEINLGF SLYLAIYNTG
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g23430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010433644.11e-111PREDICTED: transcription factor bHLH126-like isoform X1
SwissprotQ9STJ65e-99BH126_ARATH; Transcription factor bHLH126
TrEMBLA0A3P6EWZ81e-106A0A3P6EWZ8_BRAOL; Uncharacterized protein
STRINGXP_010433644.11e-111(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-102bHLH family protein