PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g24190

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

HRT-like

Protein Properties

Length: 411aa MW: 46307.1 Da PI: 9.6027

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g24190	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	53.4	4.3e-17	206	236	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +C v+ledG++C+++P+kgRKRC eHKG+Ri Tp7g24190 206 VCTVLLEDGTTCTTTPIKGRKRCIEHKGQRI 236 6*****************************7 PP
2	HRT-like	42.8	8.6e-14	261	291	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGvil d C+ +Pv RKRCe HKGmR+ Tp7g24190 261 ICGVILPDMVRCRGKPVSRRKRCEDHKGMRV 291 8*****************************7 PP
3	HRT-like	64.9	1.1e-20	379	409	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l +GsvC+++PvkgRKRCeeHKGmRi Tp7g24190 379 ICGVKLYNGSVCEKPPVKGRKRCEEHKGMRI 409 8*****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MFKRDDYIRT KHDAVSSKWQ GFARSMLLRK PFSEAAELKR TLADNSLISR DLGPKILIGA 60 KDREDFRKEK DFVGRYRVQG SIPGLGLAVI NHDADDIKAS LRPTESIRSR LRSYGRSIAH 120 QDLLKKLGNN EFMSQGVSQT FIQKKIGTRS KDTKHDFAEE KEISCDAAEE KNTVLASILR 180 LSRSRPQSVL ERHDDDLIDG FDSASVCTVL LEDGTTCTTT PIKGRKRCIE HKGQRITCVP 240 PVKKLPCEVP TGRECDKTED ICGVILPDMV RCRGKPVSRR KRCEDHKGMR VNAFFFLLNP 300 TERDKIVKEE KSKPGIGTCS MNQEESDPGL LCEATTKNGL PCRRSAPKGS RRCWQHNKDE 360 AVDHRLTENV HSATISQVIC GVKLYNGSVC EKPPVKGRKR CEEHKGMRIT S

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MFKRDDYIRT KHDAVSSKWQ GFARSMLLRK PFSEAAELKR TLADNSLISR DLGPKILIGA  60
KDREDFRKEK DFVGRYRVQG SIPGLGLAVI NHDADDIKAS LRPTESIRSR LRSYGRSIAH  120
QDLLKKLGNN EFMSQGVSQT FIQKKIGTRS KDTKHDFAEE KEISCDAAEE KNTVLASILR  180
LSRSRPQSVL ERHDDDLIDG FDSASVCTVL LEDGTTCTTT PIKGRKRCIE HKGQRITCVP  240
PVKKLPCEVP TGRECDKTED ICGVILPDMV RCRGKPVSRR KRCEDHKGMR VNAFFFLLNP  300
TERDKIVKEE KSKPGIGTCS MNQEESDPGL LCEATTKNGL PCRRSAPKGS RRCWQHNKDE  360
AVDHRLTENV HSATISQVIC GVKLYNGSVC EKPPVKGRKR CEEHKGMRIT S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that negatively modulates gibberellin-mediated developmental processes. May act as transcriptional repressor of giberellin controlled genes. Binds DNA without sequence preference. {ECO:0000269\|PubMed:16244914}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g24190

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002869624.1	0.0	protein EFFECTOR OF TRANSCRIPTION 1
Swissprot	A2RQG7	0.0	ET_BRANA; Protein EFFECTOR OF TRANSCRIPTION
TrEMBL	D7MFC2	0.0	D7MFC2_ARALL; Uncharacterized protein
STRING	Bostr.7867s0437.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26170.1	1e-143