PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g24610
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 568aa    MW: 62429.3 Da    PI: 6.88
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g24610genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.51e-31230287260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d+++++i+Y+g+H+h+k
  Tp7g24610 230 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITDIIYKGTHDHPK 287
                8****************************************.***************85 PP
2WRKY107.18.6e-34391449159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  Tp7g24610 391 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAPGCPVRKHVERASHDPKAVITTYEGKHNHD 449
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.64224288IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.4E-27225288IPR003657WRKY domain
SuperFamilySSF1182907.06E-25226288IPR003657WRKY domain
SMARTSM007748.5E-34229287IPR003657WRKY domain
PfamPF031062.5E-24230286IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-37376451IPR003657WRKY domain
SuperFamilySSF1182901.7E-29383451IPR003657WRKY domain
PROSITE profilePS5081138.629386451IPR003657WRKY domain
SMARTSM007743.1E-39391450IPR003657WRKY domain
PfamPF031064.6E-26392449IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MNPQGDNDRK EFQVDCSATG DPTARHDSAG GGGGARYKLM SPAKLPISRS TAITIPPGLS  60
PTSFLESPVF ISNIKNGDPF IPFTETSSLL IMDQVQPEPS PTTGSLFKPR PVHVSSSSYT  120
GRAIHQNNTF TEQKSTEFEF RPPASNMVYA ELDKHRSEPP VQFQGHGHGS SHSPSSISEA  180
AASSSDLSRP TPPRQTTPTS SDIPAGSEQD ESVQTSQNDS RGSTPSTLAD DGYNWRKYGQ  240
KHVKGSEFPR SYYKCTHPNC EVKKLFERSH DGQITDIIYK GTHDHPKPQP GRRNSGGLGM  300
PAQEERVEKG SSVYNLSQAI EQTGNLEVPP ISATDDGGEV AVPNRNKDDT DDDDSFTKRR  360
RLDGTMEITP LVKPIREPRV VVQTLSEVDI LDDGYRWRKY GQKVVRGNPN PRSYYKCTAP  420
GCPVRKHVER ASHDPKAVIT TYEGKHNHDV PTSKSSSNHD IQPRFRPDET DTISLNLGVG  480
ISSDGHDHTS NERQHQNQQL VNQTHPNGVG FRFVHAAPIS SYYASLNSGS NQYDPRETPN  540
EAQTGDISSL NHSSYPYPHN IGRIQSGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-38228451877Probable WRKY transcription factor 4
2lex_A8e-38228451877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357361KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g24610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9123930.0EU912393.1 Brassica napus WRKY20-1 transcription factor (WRKY20-1) mRNA, complete cds.
GenBankKC2465700.0KC246570.1 Brassica napus WRKY transcription factor 20.1 (WRKY20.1) mRNA, complete cds.
GenBankKC2465710.0KC246571.1 Brassica napus WRKY transcription factor 20.2 (WRKY20.2) mRNA, complete cds.
GenBankKM5931330.0KM593133.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633666.10.0probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLR0GYJ60.0R0GYJ6_9BRAS; Uncharacterized protein
STRINGBostr.7867s0486.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein