PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g24720
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 158aa    MW: 17587.7 Da    PI: 6.2681
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g24720genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.24.9e-1484132153
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                +++kGVr ++ + +W AeI+dps+   + + +lg+f ta++Aa+a++  + kl
  Tp7g24720  84 KKHKGVRKRP-SSKWSAEIWDPSS---KVKRWLGTFTTAKMAAQAYDDEAAKL 132
                589*******.7*********954...4777****************988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.0E-1985137IPR001471AP2/ERF domain
SMARTSM003801.6E-2085149IPR001471AP2/ERF domain
PROSITE profilePS5103217.46485146IPR001471AP2/ERF domain
PfamPF008471.7E-685127IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-1485137IPR016177DNA-binding domain
PRINTSPR003673.4E-58697IPR001471AP2/ERF domain
CDDcd000182.82E-1988138No hitNo description
PRINTSPR003673.4E-5108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MDDSENLPYN DQKPLRLTRD QEHVIMVSAL RQVISNVGGD TTSSSNLVAC EALQPLDAGP  60
CPLCNLNGCY GCAFPRHEEI EKEKKHKGVR KRPSSKWSAE IWDPSSKVKR WLGTFTTAKM  120
AAQAYDDEAA KLVERRAARS GTKNGEEAYT ETKTVEDD
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g24720
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137617.12e-78PREDICTED: ethylene-responsive transcription factor ERF120-like
RefseqXP_013741557.12e-78ethylene-responsive transcription factor ERF120-like
SwissprotQ9FGC93e-65EF121_ARATH; Putative ethylene-responsive transcription factor ERF121
TrEMBLA0A397L4F07e-78A0A397L4F0_BRACM; Uncharacterized protein
STRINGBra019087.1-P6e-78(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67010.11e-58ERF family protein