PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g27330
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 328aa    MW: 37359.5 Da    PI: 9.0295
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g27330genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.3e-191097196
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
               ffk++   ++++s+ +v+p ++ +e  +    +kt  l+   g  W+v l   kk+g+++++kGW +Fv++n L++gD+++F +dg ++f   v++
  Tp7g27330 10 FFKIF--LSHFSSHSMVIPVSYYDELPLG--LPKTALLQGIGGCFWNVSL--MKKRGEVYFGKGWAKFVEDNCLRDGDVLTFAYDGYRNF--EVSI 97
               88988..9999999*********999555..6679***************..********************************998888..5544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.0E-234103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-215103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-18898No hitNo description
PROSITE profilePS5086313.3528101IPR003340B3 DNA binding domain
SMARTSM010191.3E-2010101IPR003340B3 DNA binding domain
PfamPF023622.3E-161096IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-6230316IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-8230315IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.43236323IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAATDSLPRF FKIFLSHFSS HSMVIPVSYY DELPLGLPKT ALLQGIGGCF WNVSLMKKRG  60
EVYFGKGWAK FVEDNCLRDG DVLTFAYDGY RNFEVSIYGS GGCKEARAVA EVIYDSEDSV  120
SYLSSEDTNT SSEPEVAKTV PKTRNKEIFP RKEKVMDVSD ESEDSNSSDS SYSPLNEDTI  180
PNVRPEVAYS KKKGKSKPVK AVGSTSNSAH SVSRKKESNK IKNLEVYLDD PKNVHFVTIV  240
KNRTYELFIH AQLVKDYGLK FQDYVYFIDN YGKLEARAAK WQDQRVCIKR WNHICKRNRL  300
KKGDRILCEI FRNQCLVYAI KIHIIAGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-1411033104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g27330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469476.11e-127PREDICTED: B3 domain-containing protein At4g34400-like
TrEMBLA0A078JUD31e-125A0A078JUD3_BRANA; BnaCnng62390D protein
STRINGBo1g016660.11e-126(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.15e-87B3 family protein